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Protein Overview: gi|115445277, gi...

General Information:
Name(s) found: gi|50251803 [NCBI NR]
gi|125581463 [NCBI NR]
gi|115445277 [NCBI NR]
gi|113535949 [NCBI NR]
Description(s) found:
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  • gi|50251803|dbj|BAD27734.1| putative splicing factor 3a [Oryza sativa Japonica Group] [NCBI NR]
  • gi|125581463|gb|EAZ22394.1| hypothetical protein OsJ_06052 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115445277|ref|NP_001046418.1| Os02g0245000 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113535949|dbj|BAF08332.1| Os02g0245000 [Oryza sativa Japonica Group] [NCBI NR]
  • putative splicing factor 3a [Oryza sativa (japonica cultivar-group)] [nrdb_11152004_Chlamydomonas]
  • Os02g0245000 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 792 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAAILPLPA PDGDGDSHPQ QPPPPPPGGG AKPEPPPTVA THTRPLGIIH PPPDIRVIIE  60
   61 KTATFVSKNG PEFERRIISH NAGNAKFNFL QPSDPYHAYY QHRVSELAAA PPSAAASAAD 120
  121 AAPEPDESGA APPPADSAAA PTVDGEAAKA DHSAPFRVPP PTKVLVPPKA ELYTVHLPEG 180
  181 ITGEELDIIK LTAQFVARNG KSFLTSLAQR ESTNPQFHFI RPTHSMFTFF TKLTDTYSRV 240
  241 LNPVEGMPAL LKDLQDGAKD LTTVLERCLN RLEWDRSQEQ ARQQAEDEIE QERMQMQMID 300
  301 WHDFVVVETI EFADDECEGL PVPLTLEELK RRKRIEDLGE EEAAMELAEP AKDVEMEMDE 360
  361 EEIQLVEEGM RAARLEENEG GVQVKLAGDE EPPMRIVKNY KRPEERIPAE RDPTKFVVSP 420
  421 ITGELIPISE MEEHMRISLI DPKYKEQKER MLAKIKETTL APDDEISRNI VGLARTRPDI 480
  481 FGTTEEEVSN AVKAEIEKKK DEQPKQVIWD GHSGSIGRTA TQALSMGGEE QVDASNVPGP 540
  541 APLPRPPMPL LRPPQPLPLV NVPRFQPSAM PYPPHQQPHL MQGVPHMMPT MHPPPPPPIP 600
  601 GQPQVIRMPG SMGPMPTNIP PPPPGQNPYM PGPPRPYSMP PPPHMPTMAT MVNPIGIPQP 660
  661 PPPLPPQPPA EEQPPQPDEP EPKRLRTDDA SLIPAEQFLA QHPGPAHISV SVPNLDEGNL 720
  721 RGQVLEIGVQ SLSDTVGSLK EQIAGELQLP ANKQKLSVRT SFLKDNLTLA YYNIGPGVVI 780
  781 NLTLRERGGR KK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..151] PSI-BLAST 23.69897 No description for 2dt6A was found.
    2 View Details [152..268] PSI-BLAST 28.69897 No description for 2dt7B was found.
    3 View Details [269..480] MSA 1.222987 View MSA. No confident structure predictions are available.
    4 View Details [481..688] MSA 2.249995 View MSA. No confident structure predictions are available.
    5 View Details [689..792] PSI-BLAST 13.0 Solution structure of Ubiquitin-like domain in splicing factor AAL91182

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  0.0934358341245259 bayes_pls_golite062009
  • protein binding
    		•  0.03789551947602 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle