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Protein Overview: gi|46518441, gi|...

General Information:
Name(s) found: gi|46518441 [NCBI NR]
gi|15222794 [NCBI NR]
gi|110741637 [NCBI NR]
Description(s) found:
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  • gi|46518441|gb|AAS99702.1| At1g55880 [Arabidopsis thaliana] [NCBI NR]
  • gi|15222794|ref|NP_175984.1| pyridoxal-5'-phosphate-dependent enzyme, beta family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110741637|dbj|BAE98765.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • At1g55880 [Arabidopsis thaliana]gi|15222794|ref|NP_175984.1| pyridoxal-5'-phosphate-dependent enzyme, beta family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | pyridoxal-5'-phosphate-dependent enzyme, beta family protein | chr1:20902957-20904805 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g55880 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • catalytic/ lyase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pyridoxal-5'-phosphate-dependent enzyme family protein | chr1:20899292-20901140 REVERSE LENGTH=421 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cysteine synthase OS=Arabidopsis thaliana GN=At1g55880 PE=2 SV=1 [ARATH-contam.fasta]
  • At1g55880 OS=Arabidopsis thaliana GN=At1g55880 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 421 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: metabolic process [IEA]
    cellular amino acid metabolic process [ISS]
    cysteine biosynthetic process from serine [IEA]
    Molecular Function: pyridoxal phosphate binding [IEA]
    catalytic activity [IEA]
    lyase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVNMTGAV VAAAALLMLT SYSFFFRLSE KKKRKEKLTM RNGLVDAIGN TPLIRINSLS  60
   61 EATGCEILGK CEFLNPGGSV KDRVAVKIIQ EALESGKLFP GGIVTEGSAG STAISLATVA 120
  121 PAYGCKCHVV IPDDAAIEKS QIIEALGASV ERVRPVSITH KDHYVNIARR RADEANELAS 180
  181 KRRLGSETNG IHQEKTNGCT VEEVKEPSLF SDSVTGGFFA DQFENLANYR AHYEGTGPEI 240
  241 WHQTQGNIDA FVAAAGTGGT LAGVSRFLQD KNERVKCFLI DPPGSGLYNK VTRGVMYTRE 300
  301 EAEGRRLKNP FDTITEGIGI NRLTKNFLMA KLDGGFRGTD KEAVEMSRFL LKNDGLFVGS 360
  361 SSAMNCVGAV RVAQTLGPGH TIVTILCDSG MRHLSKFHDP KYLNLYGLSP TAIGLEFLGI 420
  421 K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..421] PSI-BLAST 92.0 Cystathionine beta-synthase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cysteine synthase activity
    		•  5.18562032111987 bayes_pls_golite062009
  • catalytic activity
    		•  2.38994231321972 bayes_pls_golite062009
  • lyase activity
    		•  1.87743897464083 bayes_pls_golite062009
  • cystathionine beta-synthase activity
    		•  1.4517088142802 bayes_pls_golite062009
  • tryptophan synthase activity
    		•  1.04832999357666 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  0.923824749425553 bayes_pls_golite062009
  • threonine synthase activity
    		•  0.727838845253199 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.476674617721478 bayes_pls_golite062009
  • L-threonine ammonia-lyase activity
    		•  0.37325071016009 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  0.249761226675912 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle