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Protein Overview: gi|213053374

General Information:
Name(s) found: gi|213053374 [NCBI NR]
Description(s) found:
  • gi|213053374|ref|ZP_03346252.1| nitrite reductase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
    Length: 847 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVRLAIIG NGMVGHRFIE DLLDKSDASL FDITVFCEEP RKAYDRVHLS SYFSHHTAEE  60
   61 LSLVREGFYE KHGVKVLVGE RAITINRQEK VIHSSAGRTV YYDKLIMATG SYPWIPPIKG 120
  121 SETQDCFVYR TIEDLNAIEA CARRSKRGAV VGGGLLGLEA AGALKNLGVE THVIEFAPML 180
  181 MAEQLDQMGG EQLRRKIESM GVRVHTSKNT QEIVQQGNEA RKTMRFADGS ELEVDFIVFS 240
  241 TGIRPRDKLA TQCGLAVAQR GGIVINDTCQ TSDPDIYAIG ECASWNNRVY GLVAPGYKMA 300
  301 QVAVDHILGS ENAFEGADLS AKLKLLGVDV GGIGDAHGRT PGARSYVYLD ESKEVYKRLI 360
  361 VSEDNKTLLG AVLVGDTSDY GNLLQLVLNA IELPENPDSL ILPSHASSGK PAIGVDKLPD 420
  421 SAQICSCFDV TKGDLIAAIN KGCHTVAALK AETKAGTGCG GCIPLVTQVL NAELAKQGIE 480
  481 VNNNLCEHFA YSRQELFHLI RVEGIKTFEE LLTKHGKGYG CEVCKPTVGS LLASCWNEYI 540
  541 LKPQHTPLQD TNDNFLANIQ KDGTYSVIPR SAGGEITPEG LVAVGRIARE FNLYTKITGS 600
  601 QRIGLFGAQK DDLPEIWRQL IEAGFETGHA YAKALRMAKT CVGSTWCRYG VGDSVGFGVE 660
  661 LENRYKGIRT PHKMKFGVSG CTRECAEAQG KDVGIIATEK GWNLYVCGNG GMKPRHADLL 720
  721 AADLDRDTLI KYLDRFMMFY IRTADKLTRT APWLDNLEGG IEYLKSVIID DKLGLNEHLE 780
  781 EEMARLRAAV VCEWTETVNT PAAQVRFKHF INSDKRDPNV QVVPEREQHR PATPYERIPV 840
  841 TLVEENA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..413] PSI-BLAST 79.0 Dihydrolipoamide dehydrogenase
    2 View Details [414..488] FFAS03 0.968 Crystal structure of L-proline dehydrogenase from P.horikoshii
    3 View Details [489..847] PSI-BLAST 68.69897 Structure of spinach nitrite reductase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity, acting on NADH or NADPH
    		•  3.16996423124828 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.84234192551392 bayes_pls_golite062009
  • catalytic activity
    		•  1.56773888754354 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor
    		•  1.28899593954888 bayes_pls_golite062009
  • dihydrolipoyl dehydrogenase activity
    		•  0.7514316327505 bayes_pls_golite062009
  • NADH dehydrogenase activity
    		•  0.520416738053292 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors
    		•  0.510122158032487 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • oxidoreductase activity, acting on other nitrogenous compounds as donors
    		•  4.43988753106114 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  3.13268224304716 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.13548955338201 bayes_pls_golite062009
  • catalytic activity
    		•  1.39967796334655 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor
    		•  1.28153249948176 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors
    		•  1.12344361399073 bayes_pls_golite062009
  • sulfite reductase (NADPH) activity
    		•  0.692997440246613 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle