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Protein Overview: gi|190405000

General Information:
Name(s) found: gi|190405000 [NCBI NR]
Description(s) found:
  • gi|190405000|gb|EDV08267.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] [NCBI NR]
    • Organism: Saccharomyces cerevisiae RM11-1a
    Length: 889 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISETPHNK SQGLQKAAGR PKIVVPEGSP SRNSDSGSFT IEGDTSLNDD LLSISGSVTP  60
   61 RARRSSRLSL DSITPRRSFD SRTLSVANSR SFGFENETHS GSMDFSPLGN NSIYEIVMNT 120
  121 RRKNWLNYPT VADIPQVSLS KNDLDDHWKT HVIEYVKNIK SDYQIFQSTN NIRNMNQMEQ 180
  181 LKELREGENM HEESFEANLR QGDAELINSI PDFYFSDKFQ LDNPRTFHKV LDAIDLFLTK 240
  241 LDMKRQAERD EAFSELRDRL NDFLDIVETL LVTEISKSSH KFFHALSEVD NIQKRALDTM 300
  301 SELKELAQNI KTIDAENIRK KISHLEMIFK RKNVEKLEQG LLQAKLVLNK TDECKSMYEE 360
  361 NKLDNCLELI KSIDYLIKGD DSINEDVQSW TRCWPYKLSN LRTIPALSAT REFLTNMKIE 420
  421 IGGKFSLQLS ILLIDDLRSF CKSIKPKETL HRIQTGSNDK KQTIFTDNFS SKITELIVRL 480
  481 NRCEELTSAF DLYREKSITE LKSIIKIYLP TENAHADNNH DEKHLNNGST SGSKLSRLIK 540
  541 EQTPAEFQSM LVNIFTHALE ALRRLYGHQK LLLDISLNEL ASVKSPNENQ HNMITQLDIR 600
  601 TGINEIIRII QLRTGKIIAV RRELNLSLRY DYFLKFYAIC VIFIQECEVL SGEFLTKYLS 660
  661 NVLASQIKHY ANAQSSKNYR NIKKKIDAEE WIPYIVDSSI QSDVNDIVSS IDIDPLSWTT 720
  721 ILDMVGGSHD CENGRSEDKE KDEGNETYQG HRKSVVVGDK TFVASSSLLA TIEVIKELMV 780
  781 LSINLPSIYL SNFEKLCYDA LQYYNSSAMA SVTQPGNSLL KTGRNLSIMG ESLDCLAEFV 840
  841 IIVQRFYQRL SNSNRDFEPF DASHYTTLLG QFQASSNKIY MANAPPPPV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..41]
    [98..245]    		 ORFEUS 7.08 Botulinum neurotoxin
    2 View Details [42..97] ORFEUS 7.08 Botulinum neurotoxin
    3 View Details [246..417] ORFEUS 8.47 alpha-actinin
    4 View Details [418..556] ORFEUS 8.47 alpha-actinin
    5 View Details [557..693] ORFEUS 8.47 alpha-actinin
    6 View Details [694..889] MSA 1.008939 View MSA. Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.3468119246528 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.28760768499625 bayes_pls_golite062009
  • actin binding
    		•  2.06460396235438 bayes_pls_golite062009
  • protein binding
    		•  1.84956862293123 bayes_pls_golite062009
  • syntaxin binding
    		•  1.83513067528946 bayes_pls_golite062009
  • SNARE binding
    		•  1.71642476140333 bayes_pls_golite062009
  • actin filament binding
    		•  1.58451318432641 bayes_pls_golite062009
  • integrin binding
    		•  1.00016212897166 bayes_pls_golite062009
  • protein complex binding
    		•  0.895042950779324 bayes_pls_golite062009
  • receptor binding
    		•  0.497776738275844 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle