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Protein Overview: gi|218894134, gi...

General Information:
Name(s) found: gi|218894134 [NCBI NR]
gi|218774362 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|218894134|ref|YP_002443003.1| glutamate synthase subunit beta [Pseudomonas aeruginosa LESB58] [NCBI NR]
  • gi|218774362|emb|CAW30179.1| glutamate synthase small chain [Pseudomonas aeruginosa LESB58] [NCBI NR]
    • Organism: Pseudomonas aeruginosa LESB58
    Length: 477 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERLNSDRL NNDFQFIEVG RKDPKKKLLR QRKREFVEIH DLFKPQQAAD QAHRCLGCGN  60
   61 PYCEWKCPVH NFIPNWLKLV SEGNILAAAE LSHQTNTLPE VCGRVCPQDR LCEGACTLND 120
  121 GFGAVTIGSV EKYITDTAFA MGWRPDLSKV KPTGRRVAVI GAGPAGLGCA DVLVRNGVTP 180
  181 VVFDRNPEIG GLLTFGIPEF KLEKHVLSRR REVFTGMGIE FRLNTEIGKD VTMEQLLDEY 240
  241 DAVFMGMGTY TYMKGGFPGE DLPGVHDALD FLIANVNRNL GFEKSAEDFV DMKGKRVVVL 300
  301 GGGDTAMDCN RTSIRQGAKS VTCAYRRDEE NMPGSRKEVK NAKEEGVKFL FNRQPIAIVG 360
  361 EDRVEGVKVV ETRLGEPDAR GRRSPEPIPG SEEIIPAEAV LIAFGFRPSP APWFERFEIA 420
  421 TDSQGRVVAP AQAQFKHQTS NPKIFAGGDM VRGSDLVVTA IFEGRTAAEG ILDYLGV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..477] PSI-BLAST 74.0 Dihydropyrimidine dehydrogenase, N-terminal domain; Dihydropyrimidine dehydrogenase, domain 4; Dihydropyrimidine dehydrogenase, domain 3; Dihydropyrimidine dehydrogenase, domain 2; Dihydropyrimidine dehydrogenase, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • glutamate synthase activity
    		•  8.25305391467034 bayes_pls_golite062009
  • glutamate synthase activity, NADH or NADPH as acceptor
    		•  8.23578981764913 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
    		•  7.02480361242491 bayes_pls_golite062009
  • glutamate synthase (NADPH) activity
    		•  6.79992270958953 bayes_pls_golite062009
  • succinate dehydrogenase activity
    		•  1.80846474206463 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  1.45813178614374 bayes_pls_golite062009
  • catalytic activity
    		•  1.35682608895635 bayes_pls_golite062009
  • oxidoreductase activity
    		•  1.32475122976745 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor
    		•  0.384435272305167 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle