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Protein Overview: RNC_ECO81

General Information:
Name(s) found: RNC_ECO81 [Swiss-Prot]
Description(s) found:
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  • gi|254807249|sp|B7MYJ8.1|RNC_ECO81 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III [NCBI NR]
  • gi|218690683|ref|YP_002398895.1| ribonuclease III [Escherichia coli ED1a] [NCBI NR]
  • gi|218428247|emb|CAR09164.2| RNase III [Escherichia coli ED1a] [NCBI NR]
  • Ribonuclease 3 OS=Escherichia coli O81 (strain ED1a) GN=rnc PE=3 SV=1 [Swiss-Prot]
    • Organism: Escherichia coli ED1a
    Length: 226 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPIVINRLQ RKLGYTFNHQ ELLQQALTHR SASSKHNERL EFLGDSILSY VIANALYHRF  60
   61 PRVDEGDMSR MRATLVRGNT LAELAREFEL GECLRLGPGE LKSGGFRRES ILADTVEALI 120
  121 GGVFLDSDIQ TVEKLILNWY QTRLDEISPG DKQKDPKTRL QEYLQGRHLP LPTYLVVQVR 180
  181 GEAHDQEFTI HCQVSGLSEP VVGTGSSRRK AEQAAAEQAL KKLELE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..226] PSI-BLAST 48.0 RNase III endonuclease catalytic domain; RNase III, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  2.103878681691 bayes_pls_golite062009
  • endoribonuclease activity
    		•  2.02847548000256 bayes_pls_golite062009
  • endonuclease activity
    		•  1.52328576888271 bayes_pls_golite062009
  • binding
    		•  1.36306903445995 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.33734225890407 bayes_pls_golite062009
  • double-stranded RNA binding
    		•  0.80785216315429 bayes_pls_golite062009
  • catalytic activity
    		•  0.328884095744829 bayes_pls_golite062009
  • protein binding
    		•  0.018276859224266 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle