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Protein Overview: gi|63147400, gi|...

General Information:
Name(s) found: gi|63147400 [NCBI NR]
gi|42561856 [NCBI NR]
Description(s) found:
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  • gi|63147400|gb|AAY34173.1| At1g09320 [Arabidopsis thaliana] [NCBI NR]
  • gi|42561856|ref|NP_172403.3| agenet domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • agenet domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Agenet domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | agenet domain-containing protein | chr1:3010272-3012230 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g09320 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | agenet domain-containing protein | chr1:3010270-3012228 REVERSE LENGTH=517 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Agenet domain-containing protein OS=Arabidopsis thaliana GN=At1g09320 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 517 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRPRRSLGV SSPAKQRKKA APKNSMATRA NRKRLPSYLK PGSAVEISSD EIGFRGSWYM  60
   61 GKVITIPSSS DKDSVKCQVE YTTLFFDKEG TKPLKEVVDM SQLRPPAPPM SEIEKKKKIV 120
  121 VGEEVDAFYN DGWWEGDVTE VLDDGKFSVF FRSSKEQIRF RKDELRFHRE WVDGAWKPPL 180
  181 EETEEEEDES EEDKLDDSED EEDILARVDL ETTRAIAKQM FSSGTVVEVS SDEEGFQGCW 240
  241 FAAKVVEPVG EDKFLVEYRD LREKDGIEPL KEETDFLHIR PPPPRDEDID FAVGDKINAF 300
  301 YNDGWWVGVV IDGMKHGTVG IYFRQSQEKM RFGRQGLRLH KDWVDGTWQL PLKGGKIKRE 360
  361 KTVSCNRNVR PKKATEKQAF SIGTPIEVSP EEEGFEDSWF LAKLIEYRGK DKCLVEYDNL 420
  421 KAEDGKEPLR EEVNVSRIRP LPLESVMVSP FERHDKVNAL YNDGWWVGVI RKVLAKSSYL 480
  481 VLFKNTQELL KFHHSQLRLH QEWIDGKWIT SFKSQKV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..223] FFAS03 1.41 CRYSTAL STRUCTURE OF 3-MBT REPEATS OF LETHAL (3) MALIGNANT BRAIN TUMOR (SELENO-MET) AT 1.85 ANGSTROM
    2 View Details [224..378] PSI-BLAST 19.522879 Structure of the N-terminal domain of Fragile X Mental Retardation Protein
    3 View Details [379..517] FFAS03 2.01 No description for 2gf7A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.242901701593652 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle