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Protein Overview: gi|42562521

General Information:
Name(s) found: gi|42562521 [NCBI NR]
Description(s) found:
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  • gi|42562521|ref|NP_174698.2| 5'-3' exonuclease family protein [Arabidopsis thaliana] [NCBI NR]
  • 5'-3' exonuclease family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 5'-3' exonuclease family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | 5'-3' exonuclease family protein | chr1:12553275-12554277 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • 5'-3' exonuclease/ DNA binding / catalytic/ nuclease [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | 5'-3' exonuclease family protein | chr1:12553297-12554299 REVERSE LENGTH=264 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • 5'-3' exonuclease-like protein OS=Arabidopsis thaliana GN=At1g34380 PE=4 SV=1 [ARATH-contam.fasta]
  • Isoform of Q66GR7, 5'-3' exonuclease family protein OS=Arabidopsis thaliana GN=At1g34380 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 264 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: NONE FOUND
    Molecular Function: 5'-3' exonuclease activity [IEA]
    DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITVGFIQPN SLFSFSTKSI DKTQPSRTKW VSSSSSSFSS HSSVETFHRT GNVQVLQKDV  60
   61 LCGNNEEIRK KNKRVFFLDV SPLCYEGNKP SSQAFGHWIS LFFSQVSLTD PVIAVIDGEE 120
  121 GNQRRRELLP SYKAHRKSPN HGRYSKRPHQ FVDEVLRKCN VPVVRIEGHE ADDVVATLME 180
  181 QAVQRGYRAV IASPDKDFKQ LISENVQIVI PLADLRRWSF YTLKHYHAQY NCDPQSDLSF 240
  241 RKCLNRLMAT NMSLDACLSV NFLC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..264] PSI-BLAST 66.69897 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.845290320008287 bayes_pls_golite062009
  • hydrolase activity
    		•  0.31554871338907 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.12799711467808 bayes_pls_golite062009
  • nuclease activity
    		•  0.0878151841480506 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle