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Protein Overview: VPS41_ARATH

General Information:
Name(s) found: VPS41_ARATH [Swiss-Prot]
Description(s) found:
Found 9 descriptions.
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  • Vacuolar protein sorting-associated protein 41 homolog OS=Arabidopsis thaliana GN=VPS41 PE=3 SV=3 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 980 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: gravitropism [IMP]
    protein targeting to vacuole [TAS]
    Molecular Function: nucleotide binding [ISS]
    zinc ion binding [IEA]
    protein binding [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVPPENGV DGDDEREEEE EDEEEEEEEE EEENGDEAEE EPRLKYQRMG GNVPALLSND  60
   61 AASCIAVAAR MIALGTHDGT VRILDLLGNQ VKEFRAHTAP VNDINFDTEG EYIGSCSDDG 120
  121 SVVINSLFTD DEKMKFDYHR PMKAISLDPD YTKKQSKRFV AGGLAGHLYM NSKKWFGNKD 180
  181 QVLHSGEGPI HSVKWRGSLI AWANDVGVKV YDTAKDQRVT FIEKPRGSPR PEALLPHLVW 240
  241 QDDTLLVIGW GTSVKIASIK SDQQQTGTFR QIQMSSLTQV DIVASFQTSY YISGIAPFGD 300
  301 SLVILAYIPI EGDGEKEFSS TTTLSRQGNA QRPEIRIVSW NNDELTMDAL PVHGFEHYKA 360
  361 KDYSLAHAPF PGSSYAGGQW AAGDEPLYYI VSPKDVVIAK PRDAEDHINW LLQHGFHEKA 420
  421 LAAVEASEGR TELIDKVGAG YLDHLIVERK YAEAASLCPK LLRGSASAWE RWVFHFAQLR 480
  481 QLPVLVPYMP TDNPRLKDTV YEVALVALAT NPSYHKELLS AVKSWPRSVY SALTVISAIE 540
  541 PQLNTSSMTD ALKEALAELY VIDGQYQKAF SLYADLLKPE VFDFIEKYSL HEAIRGKVVQ 600
  601 LMLLDCKRAT VLFIQNRDLI PPSEVVPQLL KAGKNPQVLK AGKKCDSRYY LYLYLHALFE 660
  661 VSHDTGKDFH DMQVELYAEY DTKMLLPFLR SSQHYKLEKA YELCVKKDFL REQVFVLGRM 720
  721 GNAKQALAVI INKLGDIEEA VEFVSMQHDD DLWEELIKQC LNKPEMVGLL LEHTVGNLDP 780
  781 LYIVNMVPNG LEIPRLRDRL VKIVTDYRTE TSLRHGCNDI LKTDIVNLLV KCFNEARRGV 840
  841 CLSHEDDDSR AKREDNNRSS FSQRMVVDKS LSIKMTEVKS KTRGDTRCCM CFDPVSIRGD 900
  901 TVVVFFCCHA YHETCLMDAA FSNNNHKTTK GSSGYEYSYD NGVDEEEEDE EEDEDGDGDR 960
  961 PGRSRLRCIL CTTAAAASAR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..184] PSI-BLAST 67.0 No description for 2ovpB was found.
    2 View Details [185..661] PSI-BLAST 4.0 Crystal Structure Of Human Fibroblast Activation Protein alpha
    3 View Details [662..980] PSI-BLAST 37.09691 Clathrin D6 Coat


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle