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Protein Overview: gi|15223384

General Information:
Name(s) found: gi|15223384 [NCBI NR]
Description(s) found:
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  • gi|15223384|ref|NP_171642.1| zinc finger (CCCH-type/C3HC4-type RING finger) family protein [Arabidopsis thaliana] [NCBI NR]
  • zinc finger (CCCH-type/C3HC4-type RING finger) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Zinc finger (CCCH-type/C3HC4-type RING finger) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • nucleic acid binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 586 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSGEPKPS QQEEPLPQPA AQETQSQQVC TFFKKPTKSK NIRKRTIDAD EEDGDSKSES  60
   61 SILQNLKKVA KPDSKLYFSS GPSKSSTTTS GAPERSVFHY DSSKEIQVQN DSGATATLET 120
  121 ETDFNQDARA IRERVLKKAD EALKGNKKKA SDEKLYKGIH GYTDHKAGFR REQTISSEKA 180
  181 GGSHGPLRAS AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFLHDRGDY KPGWQIEKEW 240
  241 EEAEKVRKRN KAMGVEDEDD EADKDSDEDE NALPFACFIC REPFVDPVVT KCKHYFCEHC 300
  301 ALKHHTKNKK CFVCNQPTMG IFNAAHEIKK RMAEERSKAE QGLRRLWPVG EVVPKSKAVT 360
  361 RVWWDINRCP VPADVDVRRV GPCIKRALEK LGYSGPLTIT AVGILTDVPH DFLRQVHSSG 420
  421 IALHHVPTVS ETALSGIGWA VVKWTWYNQP PANLMLISYE HIYLTTLDML GRIGYNTVRS 480
  481 ILPDDPQQAA SSASPSTGSF LWESLLASLP AADDMDSGAP QEDKCGEMGE PALLCEQCRF 540
  541 TVQGFENFST HLKSEEHAHE SQYYRNEDDE TDGDDYVRDS EDDEEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..168] deduced N/A No confident structure predictions are available.
    2 View Details [169..270] FFAS03 2.83 Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d
    3 View Details [271..336] PSI-BLAST 8.69897 Solution structure of the RING domain of the Zinc finger protein 183-like 1
    4 View Details [337..515] FFAS03 2.8 No description for 2qipA was found.
    5 View Details [516..586] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle