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Protein Overview: gi|42571371

General Information:
Name(s) found: gi|42571371 [NCBI NR]
Description(s) found:
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  • gi|42571371|ref|NP_973776.1| RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNA polymerase Rpb7 N-terminal domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | RNA polymerase Rpb7 N-terminal domain-containing protein | chr1:2087644-2089038 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA-directed RNA polymerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RNA polymerase Rpb7 N-terminal domain-containing protein | chr1:2087645-2089039 FORWARD LENGTH=189 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • RNA polymerase Rpb7 N-terminal domain-containing protein OS=Arabidopsis thaliana GN=At1g06790 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of Q9M9Y6, RNA polymerase Rpb7 N-terminal domain-containing protein OS=Arabidopsis thaliana GN=At1g06790 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 189 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transcription [IEA]
    Molecular Function: DNA-directed RNA polymerase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYLSELEHS LRVPPHLLNL PLEDAIKSVL QNVFLDKVLA DLGLCVSIYD IKSVEGGFVL  60
   61 PGDGAATYKV GLRIVVFRPF VGEVIAAKFK ESDANGLRLT LGFFDDIYVP APLMPKPNRC 120
  121 EPDPYNRKQM IWVWEYGEPK EDYIVDDACQ IKFRVESISY PSVPTERAED AKPFAPMVVT 180
  181 VSSFIKLIL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..189] PSI-BLAST 29.39794 No description for 2ckzB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle