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Protein Overview: gi|42573563

General Information:
Name(s) found: gi|42573563 [NCBI NR]
Description(s) found:
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  • gi|42573563|ref|NP_974878.1| pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] [NCBI NR]
  • pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 PfkB-type carbohydrate kinase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | pfkB-type carbohydrate kinase family protein | chr5:17685169-17687312 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • kinase/ ribokinase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | pfkB-like carbohydrate kinase family protein | chr5:17667942-17670085 REVERSE LENGTH=281 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • PfkB-like carbohydrate kinase family protein OS=Arabidopsis thaliana GN=At5g43910 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of F4K7C7, PfkB-like carbohydrate kinase family protein OS=Arabidopsis thaliana GN=At5g43910 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 281 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: D-ribose metabolic process [IEA]
    Molecular Function: ribokinase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSCSDEAIP GQPIVLGCGQ LCLDYLVTVA SFPIPDQKIR GTSFKVQGGG NTGNALTCVA  60
   61 RLGLPCRILA KVADDSHGRY MVEELESSGV DTSFCMSAKD GASHFNYVIV DNQTNTRTCI 120
  121 YTPGYPPLLP DDLTESLLLD VLDGVRVLYV NGRSREAELL LAQKAHSKNI PILINAEKKR 180
  181 TGLDELIDLA DYAICSTNFP QEWTGAPSSP SALLSMLIRL PKLKFVIMTL GEHGCVMLER 240
  241 CSSEVSGSEE ETDIDELHES LKQSTDFTSV LPVCNSSGDW L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..281] PSI-BLAST 51.69897 Ribokinase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.21468720585581 bayes_pls_golite062009
  • transferase activity
    		•  1.02723496131053 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.99166926796598 bayes_pls_golite062009
  • kinase activity
    		•  0.93808159830136 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle