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Protein Overview: gi|42573473

General Information:
Name(s) found: gi|42573473 [NCBI NR]
Description(s) found:
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  • gi|42573473|ref|NP_974833.1| transcription elongation factor-related [Arabidopsis thaliana] [NCBI NR]
  • transcription elongation factor-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transcription elongation factor-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | transcription elongation factor-related | chr5:8885553-8889487 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | SPOC domain / Transcription elongation factor S-II protein | chr5:8885550-8889484 FORWARD LENGTH=997 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • SPOC dand transcription elongation factor S-II domain protein OS=Arabidopsis thaliana GN=At5g25520 PE=2 SV=1 [ARATH-contam.fasta]
  • SPOC and transcription elongation factor S-II domain protein OS=Arabidopsis thaliana GN=At5g25520 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 997 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transcription [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNMGTELI DLETVKADSD AFGETNLMEL VGSNDPPSLQ HISVSEIEQE PMEISVSGPL  60
   61 SFQFEPEAVS FQSSMLVDTQ SLMPQLQLPY SVERSVAACS NSVTGKRKSP PESTLSGSAT 120
  121 SEKLDASNKR VEPVHHRPWL EQFYSECIQR GHMPPPATLS TKTEHLPTPA KKVRQMEPAS 180
  181 QKSGKQVMNK KQAGLSQGSV KTLNDGNESL RSKMKESLAA ALALVHEHEE SPKEKKNSET 240
  241 EEASVPVADS NEPASACGTS VTVGEDITPA MSTRDESFEQ KNGNGRTLSQ ESSKDTKMNY 300
  301 VNQSDVQKTQ FDEVFPCDDV RFSDSIFTGD ELLQGNGLSW VLEPVSDFGE NETQKSFEDP 360
  361 ELLASKIELE LFKLFGGVNK KYKEKGRSLL FNLKDKNNPE LRESVMSGKI SPERLCNMTA 420
  421 EELASKELSQ WRQAKAEEMA EMVVLRDTDI DVRNLVRKTH KGEFQVEIDP VDSGTVDVSA 480
  481 EITSNSKPRA KAKSSKSSTK ATLKKNDSND KNIKSNQGTS SAVTLPPTEE IDPMQGLSMD 540
  541 DEMKDVGFLP PIVSLDEFME SLNSEPPFGS PHEHPPGKED PASEKSDSKD GSHSKSPSRS 600
  601 PKQSPKEPSE SVSSKTELEK TNVISPKPDA GDQLDGDVSK PENTSLVDSI KEDRIWDGIL 660
  661 QLSSASVVSV TGIFKSGEKA KTSEWPTMVE VKGRVRLSAF GKFVKELPLS RSRVLMVMNV 720
  721 VCKNGISQSQ RDSLIEVAKS YVADQRVGYA EPTSGVELYL CPTLGETLDL LSKIISKDYL 780
  781 DEVKCSEDIG LIGVVVWRRA VVASPGSRHK PGFKRQHSST GTKRSVLAPE NQKSRSVSVT 840
  841 NPSVVNVESM RNHGLVGCDD DDEDMPPGFG PVAAKDDDDL PEFNFNSSSG PVTSSPRPPL 900
  901 QSRSLDQVRE LILKYGNSTG SGSKRPWDGH DDDDDDDIPE WQPQLPPPPP DLSPQFHSGT 960
  961 MARPPAQRPV AGPPSGWKAN QNAPRQQQYS ARRNRGF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..230] deduced N/A No confident structure predictions are available.
    2 View Details [231..335] deduced N/A No confident structure predictions are available.
    3 View Details [336..475] PSI-BLAST 9.69897 No description for 2dmeA was found.
    4 View Details [476..544] deduced N/A No confident structure predictions are available.
    5 View Details [545..685] MSA 1.346995 View MSA. No confident structure predictions are available.
    6 View Details [686..903] deduced N/A No confident structure predictions are available.
    7 View Details [904..997] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle