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Protein Overview: gi|30687670

General Information:
Name(s) found: gi|30687670 [NCBI NR]
Description(s) found:
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  • gi|30687670|ref|NP_850856.1| ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] [NCBI NR]
  • ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr5:6804077-6805104 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RNA binding / structural constituent of ribosome [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr5:6804075-6805102 REVERSE LENGTH=160 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • U4/U6 small nuclear ribonucleoprotein SNU13 OS=Arabidopsis thaliana GN=At5g20160 PE=2 SV=1 [ARATH-contam.fasta]
  • Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein OS=Arabidopsis thaliana GN=At5g20160 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 160 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: ribosome biogenesis [IEA]
    Molecular Function: RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGEVVNPKA YPLADSQLSI TILDLVQQAT NYKQLKKGAN EGIRLLLMCV CLSYLLSLMF  60
   61 VKLFLIYLNL FISATKTLNR GISEFVVMAA DAEPLEILLH LPLLAEDKNV PYVFVPSKQA 120
  121 LGRACGVTRP VIACSVTSNE ASQLKSQIQH LKDAIEKLLI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..160] PSI-BLAST 35.09691 No description for 2ozbA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 5.75333813716704 bayes_pls_golite062009
  • RNA binding
    		•  5.39762744650785 bayes_pls_golite062009
  • snoRNA binding
    		•  4.95788328272916 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  3.68798692352408 bayes_pls_golite062009
  • structural molecule activity
    		•  3.12718364266877 bayes_pls_golite062009
  • mRNA binding
    		•  2.62944559104613 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.39301463005357 bayes_pls_golite062009
  • binding
    		•  2.34187530323842 bayes_pls_golite062009
  • protein binding
    		•  0.381324299701367 bayes_pls_golite062009
  • catalytic activity
    		•  0.264002643439785 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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    Created and Maintained by: Michael Riffle