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Protein Overview: gi|42572895

General Information:
Name(s) found: gi|42572895 [NCBI NR]
Description(s) found:
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  • gi|42572895|ref|NP_974544.1| transport protein, putative [Arabidopsis thaliana] [NCBI NR]
  • transport protein, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transport protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | transport protein, putative | chr4:8167569-8172261 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • protein binding / transporter [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Sec23/Sec24 protein transport family protein | chr4:8167574-8172266 FORWARD LENGTH=620 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Sec23/sec24-like transport protein OS=Arabidopsis thaliana GN=At4g14160 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of F4JUM1, Sec23/sec24-like transport protein OS=Arabidopsis thaliana GN=At4g14160 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 620 amino acids

    Gene Ontology:
    Cellular Component: COPII vesicle coat [IEA]
    Biological Process: ER to Golgi vesicle-mediated transport [IEA]
    intracellular protein transport [IEA]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEMADKAKV EEMDWEGIDG VRMTWNLWPR TKVEASKCVI PLAASISPIR RHPLILDLPY  60
   61 APLDCKTCKA LLNAFARVDF AAMNWVCPFC YHRNHFPSHY HSISEINLPG ELYPQYTTVE 120
  121 YTLPPDPSRV PPPPVFVFVL DTCMIEEELG YAKSALKQAI GLLPENALVG FVSFGTQAHV 180
  181 HELGFSEMSK VFVFKGNKEV TKDQILDQLG LGSSSRRAPT SGFSKGAQNG FQSSGVDRFL 240
  241 LPASECEYTL DLLLDELQSD QWPVQPGHRP QRCTGVALSV AAGLLGACLP GTGARIVALV 300
  301 GGPCTEGPGT IISKDLSDPV RSHKDLDKDA APYYKKAVKF YDSIAKQLVA QGHVLDLFAS 360
  361 ALDQVGVAEM KVAVESTGGL VVLSESFGHS VFKDSFKRMF EDGEHSLGLC FNGTLEINCS 420
  421 KDIKIQGVIG PCSSLEKKGP NVADTVIGEG NTSAWKLCGL DKSTCLTVFF DLSSTGSTAP 480
  481 GALNQQLYLQ FITRYQNSEG KSLARVTTLT RQWVDTAVST ENLVQGFDQE TAAVVMARLT 540
  541 SLKMETEEGF DATRWLDRTL IRLCSKFGEY RKDDPTSFTL KPYLTLFPQF MFNLRRSQFV 600
  601 QDLRQLCWMW LPLQLTRFFY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..620] PSI-BLAST 1000.0 No description for 2nupA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle