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Protein Overview: gi|22328601

General Information:
Name(s) found: gi|22328601 [NCBI NR]
Description(s) found:
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  • gi|22328601|ref|NP_680682.1| 3'-5' exonuclease-related [Arabidopsis thaliana] [NCBI NR]
  • 3'-5' exonuclease-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 3'-5' exonuclease-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | 3'-5' exonuclease-related | chr4:8028907-8030750 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr4:8028911-8030754 REVERSE LENGTH=263 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • 3'-5' exonuclease-related protein OS=Arabidopsis thaliana GN=At4g13885 PE=4 SV=1 [ARATH-contam.fasta]
  • Polynucleotidyl transferase, ribonuclease H-like superfamily protein OS=Arabidopsis thaliana GN=At4g13885 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 263 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process [IEA]
    Molecular Function: nucleic acid binding [IEA]
    3'-5' exonuclease activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTTEELKIS HYKLYKCFDF LVVANNKIEV AQAFVKYRRP EYFLPLVGVE FVSLTLVGKH  60
   61 FKLGKYSVVV LRGEVHSETL RCLLPKLTDQ PIGSSFLLLR PFRDVGNYCL LLHILPSSKK 120
  121 FTLAMQFLCE LIDSTSKEEE DVFRVLVYAS DELLDVKTYR ALIGCSWELF RCSPGEGCNC 180
  181 PDMCRLQHLI EDSTLVKVGI GIDGDSVKLF HDYGLLKPNR IRLGNWEVHP LSKQQLQYAA 240
  241 TDAYASWHLH QVLKDLPDAV SGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..144] MSA 1.113971 View MSA. No confident structure predictions are available.
    2 View Details [145..263] PSI-BLAST 24.39794 Crystal Structure of Escherichia coli RNase D, an exoribonuclease involved in structured RNA processing

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.722279828632226 bayes_pls_golite062009
  • hydrolase activity
    		•  0.29272620969648 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.24934115119652 bayes_pls_golite062009
  • nuclease activity
    		•  0.239989310123501 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle