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Protein Overview: COPB2_ARATH

General Information:
Name(s) found: COPB2_ARATH [Swiss-Prot]
Description(s) found:
Found 7 descriptions.
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  • Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 948 amino acids

    Gene Ontology:
    Cellular Component: membrane [IDA]
    Biological Process: vesicle-mediated transport [IEA]
    intracellular protein transport [IEA]
    Molecular Function: protein binding [IEA]
    structural molecule activity [IEA]
    clathrin binding [ISS]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKSSTMLVH YDKGTPAVAN EIKEALEGND VEAKVDAMKK AIMLLLNGET IPQLFITIIR  60
   61 YVLPSEDHTI QKLLLLYLEL IEKTDSKGKV LPEMILICQN LRNNLQHPNE YIRGVTLRFL 120
  121 CRMKETEIVE PLTPSVLQNL EHRHPFVRRN AILAIMSIYK LPHGDQLFVD APEMIEKVLS 180
  181 TEQDPSAKRN AFLMLFTCAE ERAVNYLLSN VDKVSDWNES LQMVVLELIR SVCKTKPAEK 240
  241 GKYIKIIISL LSATSSAVIY ECAGTLVSLS SAPTAIRAAA NTYCQLLLSQ SDNNVKLILL 300
  301 DRLYELKTLH RDIMVELIID VLRALSSPNL DIRRKTLDIA LDLITHHNIN EVVQMLKKEV 360
  361 VKTQSGELEK NGEYRQMLIQ AIHACAVKFP EVASTVVHLL MDFLGDSNVA SALDVVVFVR 420
  421 EIIETNPKLR VSIITRLLDT FYQIRAGKVC PCALWIIGEY CLSLSEVESG ISTITQCLGE 480
  481 LPFYSVSEES EPTETSKKIQ PTSSAMVSSR KPVILADGTY ATQSAASETT FSSPTVVQGS 540
  541 LTSGNLRALL LTGDFFLGAV VACTLTKLVL RLEEVQSSKT EVNKTVSQAL LIMVSILQLG 600
  601 QSPVSPHPID NDSYERIMLC IKLLCHRNVE MKKIWLESCR QSFVKMISEK QLREMEELKA 660
  661 KTQTTHAQPD DLIDFFHLKS RKGMSQLELE DQVQDDLKRA TGEFTKDEND ANKLNRILQL 720
  721 TGFSDPVYAE AYVTVHHYDI ALEVTVINRT KETLQNLCLE LATMGDLKLV ERPQNYSLAP 780
  781 ERSMQIKANI KVSSTETGVI FGNIVYETSN VMERNVVVLN DIHIDIMDYI SPAVCSEVAF 840
  841 RTMWAEFEWE NKVAVNTTIQ NEREFLDHII KSTNMKCLTA PSAIAGECGF LAANLYAKSV 900
  901 FGEDALVNLS IEKQTDGTLS GYIRIRSKTQ GIALSLGDKI TLKQKGGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..625] PSI-BLAST 98.69897 No description for 2vglB was found.
    2 View Details [626..948] PSI-BLAST 40.30103 Structural Identification of a conserved appendage domain in the carboxyl-terminus of the COPI gamma-subunit.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.73

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle