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Protein Overview: gi|42572975

General Information:
Name(s) found: gi|42572975 [NCBI NR]
Description(s) found:
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  • gi|42572975|ref|NP_974584.1| vesicle-associated membrane family protein / VAMP family protein [Arabidopsis thaliana] [NCBI NR]
  • vesicle-associated membrane family protein / VAMP family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Vesicle-associated membrane family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | vesicle-associated membrane family protein / VAMP family protein | chr4:11426147-11427450 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • structural molecule [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | PapD-like superfamily protein | chr4:11426136-11427439 FORWARD LENGTH=212 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Isoform 2 of Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 [ARATH-contam.fasta]
  • Isoform of Q8VYN2, Isoform 2 of Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 212 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: structural molecule activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH  60
   61 HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS FLPTKRRLKL DPSEKLYFPY 120
  121 EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN 180
  181 NEKPMDQRSR VKFKIMSLKV KGPMDYVPEL VC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] FFAS03 1.05 K Intermediate Structure of Sensory Rhodopsin II/Transducer Complex in Combination with the Ground State Structure
    2 View Details [92..212] PSI-BLAST 27.39794 Major sperm protein, MSP


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle