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Protein Overview: gi|105830019, gi...

General Information:
Name(s) found: gi|18411957 [NCBI NR]
gi|105830019 [NCBI NR]
Description(s) found:
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  • gi|18411957|ref|NP_567239.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|105830019|gb|ABF74711.1| At4g02485 [Arabidopsis thaliana] [NCBI NR]
  • oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Oxidoreductase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr4:1092695-1094437 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At4g02485 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:1092695-1094437 FORWARD LENGTH=226 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At4g02485 OS=Arabidopsis thaliana GN=At4g02485 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 226 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: NONE FOUND
    Molecular Function: oxidoreductase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEAENLRA AFGDSSDDED IADRPGKETI GIGDSAVWER VEEINGLWLY RNFLSIAHQS  60
   61 HLLSAILNEG WFVEESINQA MRFGDLPSWA TELSDLIRET LESVDLPVLS ADLLWREPLF 120
  121 DQLIVNLYQP GEGICAHVDL LRFEDGIAIV SLESPCVMRF SPAEKNEYEA VDVLLNPGSL 180
  181 ILMSGEARYR WKHEINRKQN GFQLWEGEEI DQKRRISITL RKLCQA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..226] PSI-BLAST 36.39794 Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.391261742890951 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle