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Protein Overview: MBD4L_ARATH

General Information:
Name(s) found: MBD4L_ARATH [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana GN=MBD4L PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 445 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [IEA]
    base-excision repair [IEA][ISS]
    Molecular Function: catalytic activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPPIIYKYK RRKDRRLGRD DDSSVMMTRR RPDSDFIEVS DENRSFALFK EDDEKNRDLG  60
   61 LVDDGSTNLV LQCHDDGCSL EKDNSNSLDD LFSGFVYKGV RRRKRDDFGS ITTSNLVSPQ 120
  121 IADDDDDSVS DSHIERQECS EFHVEVRRVS PYFQGSTVSQ QSKEGCDSDS VCSKEGCSKV 180
  181 QAKVPRVSPY FQASTISQCD SDIVSSSQSG RNYRKGSSKR QVKVRRVSPY FQESTVSEQP 240
  241 NQAPKGLRNY FKVVKVSRYF HADGIQVNES QKEKSRNVRK TPIVSPVLSL SQKTDDVYLR 300
  301 KTPDNTWVPP RSPCNLLQED HWHDPWRVLV ICMLLNKTSG AQTRGVISDL FGLCTDAKTA 360
  361 TEVKEEEIEN LIKPLGLQKK RTKMIQRLSL EYLQESWTHV TQLHGVGKYA ADAYAIFCNG 420
  421 NWDRVKPNDH MLNYYWDYLR IRYKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..104] deduced N/A No confident structure predictions are available.
    2 View Details [105..288] MSA 5.166992 View MSA. No confident structure predictions are available.
    3 View Details [289..445] PSI-BLAST 28.154902 Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • catalytic activity
    		•  1.60340066066017 bayes_pls_golite062009
  • hydrolase activity
    		•  0.26415395380306 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  0.10668773971346 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing N-glycosyl compounds
    		•  0.10147260280693 bayes_pls_golite062009
  • DNA N-glycosylase activity
    		•  0.10080290288194 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle