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Protein Overview: gi|124301032, gi...

General Information:
Name(s) found: gi|42565801 [NCBI NR]
gi|124301032 [NCBI NR]
Description(s) found:
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  • gi|42565801|ref|NP_190608.2| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|124301032|gb|ABN04768.1| At3g50390 [Arabidopsis thaliana] [NCBI NR]
  • transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transducin family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:18713118-18714527 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • nucleotide binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:18702137-18703546 FORWARD LENGTH=469 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At3g50390 OS=Arabidopsis thaliana GN=At3g50390 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 469 amino acids

    Gene Ontology:
    Cellular Component: heterotrimeric G-protein complex [ISS]
    Biological Process: biological_process [ND]
    Molecular Function: nucleotide binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSMHKKGTS RDVNSQAFTK LTKVETIPDP DIYDITYVDI SPSEGSSSPL SKSPWSVQVD  60
   61 PSAVDSPYHS VKVTTDTTKE KSTNHSPNIL LGSLVREEGH IYSLATSGDL LYTGSDSKNI 120
  121 RVWKNHVEFS SFKSNSGLVK AIVLAGDKIF TGHQDGKIRV WKAASKESNV HRRVGTMPNL 180
  181 LDYIRNSIVP SSYFNFTRRN RSSAALGFRH LDAISCLALS EDKRLLYSGS WDKTFKVWRV 240
  241 SDLRCVESVN AHEDAVNAVV SGFDGLVFTG SADGTVKVWR REDQAKDTKH FFSETLLKQD 300
  301 CAVTAIAVDQ SATLVYCGSS DGTVNFWERE NNMKNGGVLK GHKLAVLCLV AAGNLMFSGS 360
  361 ADLGIRVWRR PEGGGEHVCL SVLTGHAGPV KCLAVERDQE SVSGERRWIV YSGSLDRSVK 420
  421 MWRVSESSPP MVNQEFKLPD QFGGGGGGGP AELTVAPSFS AQGRISPQK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] PSI-BLAST 64.39794 PAF-AH Holoenzyme: Lis1/Alfa2
    2 View Details [86..404] PSI-BLAST 64.045757 No description for 2ovpB was found.
    3 View Details [405..469] PSI-BLAST 55.522879 Tup1, C-terminal domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle