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Protein Overview: gi|42563438, gi|...

General Information:
Name(s) found: gi|42563438 [NCBI NR]
gi|110735845 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • gi|42563438|ref|NP_186900.3| regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110735845|dbj|BAE99899.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 393 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: chromatin binding [ISS]
    Ran GTPase binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTATSIIAW GSGEDGQLGI GTNEEKEWAC VVEALEPYSV RSVVSGSRNS LAICDDGTMF  60
   61 TWGWNQRGTL GHQPETKTEN IPSRVKALAN VKITQAAIGG WHCLAVDDQG RAYAWGGNEY 120
  121 GQCGEEPLKD EMGRPVRRDI VIPKRCAPKL TVRQVAAGGT HSVVLTREGH VWTWGQPWPP 180
  181 GDIKQISVPV RVQGLENVRL IAVGAFHNLA LEEDGRLLAW GNNEYGQLGT GDTQPTSHPV 240
  241 PVQGLDDLTL VDIAAGGWHS TALTDKGEVY GWGRGEHGRL GLGDNDKSSK MVPQKVNLLA 300
  301 EEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI KIPPPEGSFN 360
  361 HTDEEEEGKW SAKSIACGGR HTLAIVEWKS DDI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..393] PSI-BLAST 80.0 Regulator of chromosome condensation RCC1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • Ran guanyl-nucleotide exchange factor activity
    		•  1.99390987036621 bayes_pls_golite062009
  • binding
    		•  1.94765972306941 bayes_pls_golite062009
  • protein binding
    		•  0.568399753749593 bayes_pls_golite062009
  • nucleoside-triphosphatase regulator activity
    		•  0.290397858094315 bayes_pls_golite062009
  • GTPase regulator activity
    		•  0.284277561587354 bayes_pls_golite062009
  • guanyl-nucleotide exchange factor activity
    		•  0.185600765994903 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.169745277614311 bayes_pls_golite062009
  • small GTPase regulator activity
    		•  0.0831999559001558 bayes_pls_golite062009
  • Ras guanyl-nucleotide exchange factor activity
    		•  0.0619395994301855 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle