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Protein Overview: gi|30683814, gi|...

General Information:
Name(s) found: gi|79403309 [NCBI NR]
gi|30683814 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • gi|79403309|ref|NP_188209.3| protein binding [Arabidopsis thaliana] [NCBI NR]
  • ref|NP_851003.1| WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1137 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: primary shoot apical meristem specification [IGI]
    Molecular Function: protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDSVTAGEW DDVEKYLSGF  60
   61 TKVDDNRYSM KIFFEIRKQK YLEALDKKDH AKAVDILVKE LKVFSTFNEE LFKEITMLLT 120
  121 LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN 180
  181 WQHQLCKNPR PNPDIKTLFV DHTCGHPNGA HTPSPTTNHL MGSVPKVGGF PPLGAHGPFQ 240
  241 PTPAPLTTSL AGWMPNPSVQ HPTVSAGPIG LGAPNSAVSM LKRERPRSPP TNSLSMDYQT 300
  301 ADSESVLKRP RPFGISDGVN NLPVNVLPVT YPGQSHAHAT YSTDDLPKNV SRILSQGSAI 360
  361 KSMDFHPVQQ TMLLVGTNLG DIAIWEVGSR EKLVSRSFKV WDLATCTVNL QASLASEYTA 420
  421 AVNRVVWSPD GGLLGVAYSK HIVHIYSYHG GEDLRNHLEI DAHAGNVNDL AFSQPNQQLC 480
  481 VVTCGEDKTI KVWDAVTGNK LHTFEGHEAP VYSVCPHQKE NIQFIFSTAV DGKIKAWLYD 540
  541 NMGSRVDYDA PGRSCTSMAY CADGTRLFSC GTSKEGESFI VEWNESEGAV KRTYLGLGKR 600
  601 SVGVVQFDTM KNKFLVAGDE FQVKFWDMDS VDLLSSTAAE GGLPSSPCLR INKEGTLLAV 660
  661 STTDNGIKIL ANAEGSRILH SMANRGLDSS RAPPGSVAKG PIVGTFGTPN SSTGMSLSMG 720
  721 ERSGPVASVT GLNGDNRSLP DVKPRIADDA EKSKTWKLTE ISERSQLRTL RLPDTLLPAR 780
  781 VVKLIYTNSG GAILALAENA AHKLWKWQKS ERNLLGKANS NVPPQLWQPS SGVLMTNDTR 840
  841 EGNKEDVVPC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT SLAFHPQDNN 900
  901 IIAIGMDDSS IQIYNVRVDE VKSKLKGHQK RVTGLAFSNV LNVLVSSGAD SQLCVWSMDG 960
  961 WEKQASKQIQ IPSGHSPNPL AHTRVQFHQD QIHVLVVHAS QLAIYEAPKL ENMKQWIPKE1020
 1021 SSGSVTDAVY SCDSQSIYAA FDDGSVSILT ATTLQLKCRI GPNSYLPSNP SSRVYPATVA1080
 1081 AHPSEPNQFA VGLTDGGVHV IEPPGPEGKW GISAPPENGA GPSVSSAPGS DQQPSDS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..194] PSI-BLAST 3.69897 No description for 2j49A was found.
    2 View Details [195..301] deduced N/A No confident structure predictions are available.
    3 View Details [302..387] PSI-BLAST 39.30103 No description for 2hesX was found.
    4 View Details [388..963] PSI-BLAST 74.09691 Actin interacting protein 1
    5 View Details [964..1137] PSI-BLAST 68.522879 No description for 2ovpB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle