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Protein Overview: gi|42571275

General Information:
Name(s) found: gi|42571275 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|42571275|ref|NP_973711.1| phototropic-responsive NPH3 family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 517 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to light stimulus [IEA]
    Molecular Function: signal transducer activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEDLSEKNL EARTEAYLKD SIFNDISNSI TVLHSCERLL PVAEEINLVG RLVNAIAVNA  60
   61 CKEQLASGLL KLDQSFSCGV PETAKPCDWW GRSLPILKLD FFQRVLSAMK SKGLNHDIIS 120
  121 DILMSYARKS LQIIREPNLV KSDSDLQRKQ RIVLEAVVGL LPTQANKSSI PISFLSSLLK 180
  181 TAIGSGTSVS CRSDLERRIS HLLDQAILED ILIPANIGAM YDTDSVQRIF SMFLNLDECE 240
  241 YRDDDDDEED AVDESEMAMY DFEGAESPKQ SSIFKVSKLM DSYLAEVALD SSLPPSKFIA 300
  301 LAELLPDHAR VVCDGLYRAV DIFLKVHPHM KDSERYRLCK TVSCKKLSQD ASSHAAQNER 360
  361 LPVQIAVQVL FYEQTRLKNA MTSGGGTGGS NQSQFFLFPN RSGSGMASGA ISPRDNYASV 420
  421 RRENRELRLE VARMRMRLTD LEKDHVSMKR DFVKPQSRRR RYGMLRKLSR GLNKLNAIVL 480
  481 RFRSSQSVAS SGKKHTEEKT NSERRFMFQK RRCHSVS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] MSA 2.066984 View MSA. No confident structure predictions are available.
    2 View Details [88..186] deduced N/A No confident structure predictions are available.
    3 View Details [187..327] MSA 2.069994 View MSA. No confident structure predictions are available.
    4 View Details [328..404] MSA 4.071992 View MSA. No confident structure predictions are available.
    5 View Details [405..517] MSA 1.057996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle