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Protein Overview: gi|42570845

General Information:
Name(s) found: gi|42570845 [NCBI NR]
Description(s) found:
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  • gi|42570845|ref|NP_973496.1| protein binding [Arabidopsis thaliana] [NCBI NR]
  • expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | protein binding / protein transporter | chr2:8957655-8959135 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | clathrin adaptor complexes medium subunit family protein | chr2:8950574-8952054 REVERSE LENGTH=427 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Clathrin adaptor complexes medium subunit family protein OS=Arabidopsis thaliana GN=At2g20790 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of Q8W0Z6, Clathrin adaptor complexes medium subunit family protein OS=Arabidopsis thaliana GN=At2g20790 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 427 amino acids

    Gene Ontology:
    Cellular Component: clathrin adaptor complex [IEA]
    Biological Process: vesicle-mediated transport [IEA]
    intracellular protein transport [IEA]
    Molecular Function: protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDYVKLCRR SDCGPAVGED LSLSSLLLNI SSITGAFMVA HAFGDIISGD TVEPEVVVSV  60
   61 SPSVGGLFDS LTGSIGISSR AKPVAAPVAS SNPSGAAITG ATASDAPKAG SRLLDRDLLR 120
  121 NFIATAMPFG TPLDLSLSNI SAMKANGFSS ADPPPQELKQ PAWKPYLYKG KQRLLFTIHE 180
  181 TVSAAMYDRD EIPDNVSVAG QINCRAELEG LPDVSFPLAG LSTAHIEAIS FHPCAQVPAH 240
  241 GIDKQNIVFQ PPLGNFVLMR YQAGCGLGPP VKGFYQLSMV SEDEGAFLFK VHLMEGYKAP 300
  301 LSMEFCTITM PFPRRRIVAF DGTPSAGTVL TTEHSVEWRI LGSGRSLSGK SLEATFPGTI 360
  361 KFSPLQSRRK GDGDDEESED ESAENVVNVE DFLVQKMNKD LPAAELEEPF CWQAYDYAKV 420
  421 CMSLASF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..427] PSI-BLAST 110.0 AP1 clathrin adaptor core


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.56

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle