YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	bocksbeutel-PB
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLSYLDTL GNKELLAKCL EHGLPGVPVT DSTRSVIIRR LKAKITGVPL NKSKSASKKA  60
   61 IPRRETVHGS QVTTPTSEPV RRTPGKSAGR TSSNNNKISE QSRRTIAYGL DNTSISGRSV 120
  121 QTTTTVSDMS SQSEDDDSYM VDSPVPNYSK DQQPRRYVSL AKSGVLTTSY TREVDQPLYE 180
  181 QEDIPRSYTY ERPHVPAATL HALPTYEPRI EPSTYRPTDL GFSRPLLTQT NLNSTSYEES 240
  241 STYNPKLSPI SPRNTFSGSA RPFGGPAPAP APIRQRQSVP VSGSNLARGR LLQPTTAVNT 300
  301 LYPQLNEFYD QPNDAGEPME TESESEVEEV PINSHFQKNR FSPLARKPLV RHHDQVSPMA 360
  361 QFRALAVSLD QKYNLKFYLI LVVSVMLATM VYVVLTPNA

Type	Start	End	Confidence
Cytoplasmic	1	374	0.52
Transmembrane Helix	375	396	0.85
Non-Cytoplasmic	397	399	0.56