YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18143317
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVLAPAWSP TTSLLLLLLL LSPGLQGTPD CSFRHSPISS TFAIKIGKLS KYLLQDYPVT  60
   61 VASNLQDDKL CGAFWRLVLA QRWMGRLKTV AGSEMEKLLE DVNTEIHFVT SCAFQPLPSC 120
  121 LRFVQANISH LLQDTHQQLE ALKPWITHRN FSRCLELQCQ PDSPTLLPPR SPGALGATSL 180
  181 PGPQSPLLLL LLLLLLPVAL LLLATAWCLC RWRRRRRTRY PGERRRTLRP RESSHLPADT 240
  241 ESELGGSQLE PGPFLGHPAP VTVPPGWRQR QHPPSAPPSP LCTKPLSPGN CI

Type	Start	End	Confidence
Signal Peptide	1	27	0.99
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	187	0.99
Transmembrane Helix	188	210	0.95
Cytoplasmic	211	292	0.99