YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16904620
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.42
Transmembrane Helix	29	55	0.81
Cytoplasmic	56	76	0.45
Transmembrane Helix	77	104	0.74
Non-Cytoplasmic	105	111	0.46
Transmembrane Helix	112	133	0.91
Cytoplasmic	134	139	0.40
Transmembrane Helix	140	161	0.74
Non-Cytoplasmic	162	177	0.57
Transmembrane Helix	178	200	0.93
Cytoplasmic	201	223	0.61
Transmembrane Helix	224	246	0.79
Non-Cytoplasmic	247	287	0.66
Transmembrane Helix	288	309	0.90
Cytoplasmic	310	319	0.77
Transmembrane Helix	320	340	0.88
Non-Cytoplasmic	341	347	0.76
Transmembrane Helix	348	372	0.85
Cytoplasmic	373	379	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNIRKSHPL TKILNNSFID LPAPSNISAW WNFGSLLGIC LILQILTGLF LAMHYTPDTT  60
   61 TAFSSVTHIC RDVNYGWIIR YMHANGASMF FICLFLHVGR GLYYGSYMFP ETWNIGIILL 120
  121 FTVMATAFMG YVLPWGQMSF WGATVITNLL SAIPYIGTNL VEWIWGGFSV DKATLTRFFA 180
  181 FHFILPFIIA ALAAIHLLFL HETGSNNPSG IPSNSDKIPF HPYYTIKDIL GALLLVLTLM 240
  241 ILVLFSPDLL GDPDNYTPAN PLNTPPHIKP EWYFLFAYAI LRSIPNKLGG VLALILSILI 300
  301 LAIIPLLHTS KQRSMMFRPL SQCLFWLLVA DLLTLTWIGG QPVEHPYIAI GQLASILYFM 360
  361 ILLILMPAAS IIENNLLKW