YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|154420
Protein type:	Globular with Signal Peptide
Type Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARHHAFIL AGTGSGCGKT TVTLGLLRLL QKRALPVQPF KVGPDYLDTG WHTAICGVAS  60
   61 RNLDSFMLPP PVLNALFCEQ MRQADIAVIE GVMGLYDGYG VDPNYCSTAA IAKQLGCPVI 120
  121 LLVDGKAIST SLTATVMGFQ HFDPTLNLAG VIVNRVTSDA HYQLLKNAIE HYCSLPVLGY 180
  181 VPPCDGVALP ERHLGLITAR ESLVNQQSWH DFAATLEQTV DVDALLSLSV LSALPAGMWP 240
  241 ERPDNTAGAG LTLALADDEA FNFYYPDNID LLERAGVNIV RFSPLHDRAL PDCQMIWLGG 300
  301 GYPELYAADL AANTVMLKHL RAAHQRGVAI YAECGGLMYL GSTLEDSGGE IHQMANIIPG 360
  361 HSKMGKRLTR FGYCEAQAMQ PTLLAAPGEI VRGHEFHYSD FIPETPAVMA CRKVRDGRVL 420
  421 QEWTGGWQTG NTFASYLHVH FAQRPEMLQH WLAAARRVL

Type	Start	End	Confidence
Signal Peptide	1	18	0.49
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	459	0.97