YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4689382
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATATATAAA TSSFMGTRLL DAHSGSGRIQ ARFGFGSKKK AAPKKVSKGP STDRPLWYPG  60
   61 AKAPEWLDGS LVGDYGFDPF GLGKPAEYLQ FELDSLDQNL AKNEAGIIIG TRTEVADVKS 120
  121 TPFQPYSEVF GLQRFRECEL IHGRWAMLAT LGALSVEWLT GVTWQDAGKV ELVEGSSYLG 180
  181 QPLPFSITTL IWIEVLVIGY IEFQRNAELD PEKRLYPGGS YFDPLGLASD PEKKATLQLA 240
  241 EIKHARLAMV GFLGFAVQAA ATGKGPLNNW ATHLSDPLHT TIIDTFSSSS

Type	Start	End	Confidence
Cytoplasmic	1	140	0.65
Transmembrane Helix	141	161	0.60
Non-Cytoplasmic	162	182	0.85
Transmembrane Helix	183	201	0.64
Cytoplasmic	202	243	0.67
Transmembrane Helix	244	262	0.49
Non-Cytoplasmic	263	290	0.76