YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24637423
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQDNTKSDE IDVLALLHKL WTKKLLILFT AFYFAAFSFL GTYFFIQPTY TSTTRIYVVN  60
   61 QATDNNNLSA QDLQAGTYLV NDYKEIITSN DVLSEVIKDE KLNMTEAELA KMISVNIPTD 120
  121 TRLISISVNA KTGQDAQTLA NKVREVASEK IKKVTKVEDV TTLEEAKLPE SPSSPNIKLN 180
  181 VLLGAVLGAF LAVVGVLVRE ILDDRVRRPE DVEDALGMTL LGIVPDTDKI

Type	Start	End	Confidence
Cytoplasmic	1	24	0.96
Transmembrane Helix	25	46	0.94
Non-Cytoplasmic	47	178	0.98
Transmembrane Helix	179	198	0.87
Cytoplasmic	199	230	0.87