YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21321022
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	110	0.95
Transmembrane Helix	111	132	0.92
Non-Cytoplasmic	133	162	0.77
Transmembrane Helix	163	190	0.76
Cytoplasmic	191	205	0.64
Transmembrane Helix	206	230	0.77
Non-Cytoplasmic	231	236	0.61
Transmembrane Helix	237	254	0.72
Cytoplasmic	255	274	0.87
Transmembrane Helix	275	298	0.86
Non-Cytoplasmic	299	308	0.88
Transmembrane Helix	309	329	0.93
Cytoplasmic	330	336	0.88
Transmembrane Helix	337	357	0.89
Non-Cytoplasmic	358	362	0.79
Transmembrane Helix	363	383	0.95
Cytoplasmic	384	401	0.89
Transmembrane Helix	402	421	0.90
Non-Cytoplasmic	422	481	0.89
Transmembrane Helix	482	504	0.82
Cytoplasmic	505	509	0.55
Transmembrane Helix	510	532	0.75
Non-Cytoplasmic	533	538	0.63
Transmembrane Helix	539	563	0.79
Cytoplasmic	564	801	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGHPSPRSH HQPPPPERDG SFNYDIESMD GGGGAWRGRY ESSEVLLRYD DEAGGGPRQP  60
   61 LLRKRTMNTT SQIAIVGANV CPIESLDYEI VENDLFKQDW RSRKKKQIFQ YIVLKWALVL 120
  121 LIGMLTGIVG FFNNLAVENI AGLKLLLTSD LMLKQKCRYF TAFLAYGGCN LVLATTAAAI 180
  181 CAYIAPAAAG SGIPEVKAYL NGVDAYSILA PSTLFVKIFG SILGVSAGFV LGKEGPMVHT 240
  241 GACIANLLGQ GGSRKYHLTW NWLRYFKNDR DRRDLITCGS AAGVAAAFRA PVGGVLFALE 300
  301 EAASWWRSAL LWRTFFTTAV VAVVLRGLIE FCRSGKCGLF GQGGLIMFDL SSTIPTYTAQ 360
  361 DVVAIIVLGI IGGVFGGLFN FLLDRILRAY SIINERGPPF KILLTMIISI ITSACSYGLP 420
  421 WLAPCTPCPA DAAEECPTIG RSGNFKNFQC PPGHYNGLAS LFFNTNDDAI RNLFSSGTEK 480
  481 EFHMSTLFVF FTAIYCLGLV TYGIAVPSGL FIPVILAGAT YGRIVGTLLG PISDLDPGLF 540
  541 ALLGAASFLG GTMRMTVSVC VILLELTNDL HMLPLVMLVL LISKTIADSF NKGVYDQIVV 600
  601 MKGLPFMEAH AEPFMRNLVA GDVVSGPLIT FSGVEKVGNI VHALRITGHN GFPVVDEPPV 660
  661 SEAPELVGLV LRSHLLVLLK GRSFMKEKVK TSGSFVLRRF GAFDFAKPGS GKGLKIEDLD 720
  721 LTDEELDMYV DLHPITNTSP YTVVETMSLA KAAVLFRALG LRHLLVVPKT PGRPPIVGIL 780
  781 TRHDFMHEHI HGLFPNLGKS H