YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12838089
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTTPNGPQ GAGAVQFMMT NKLDTAMWLS RLFTVYCSTL FVLPLLGLHE AASFYQRALL  60
   61 ANALTSALRL HQRLPHFQLS RAFLAQALLE DSCHYLLYSL IFVNSYPVTM SIFPVLLFSL 120
  121 LHAATYTKKV LDAKGSNSLP LLRSFLDKLS TNQQNILKFI ACNEIFLMPA TVFMLFSGQG 180
  181 SLLQPFIYYR FLTLRYSSRR NPYCRNLFNE LRIVVEHIIM KPSCPLFVRR LCLQSIAFIS 240
  241 RLAPTVA

Type	Start	End	Confidence
Cytoplasmic	1	27	0.90
Transmembrane Helix	28	48	0.90
Non-Cytoplasmic	49	101	0.62
Transmembrane Helix	102	126	0.72
Cytoplasmic	127	164	0.62
Transmembrane Helix	165	188	0.67
Non-Cytoplasmic	189	247	0.55