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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|20521690
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVGREEEPGL PSLPSPPPSR GALVGVELGL GGWVGVAFWS AGELFSLLQV RGKGMPNSER  60
   61 HGGKKDGSGG ASGTLQPSSG GGSSNSRERH RLVSKHKRHK SKHSKDMGLV TPEAASLGTV 120
  121 IKPLVEYDDI SSDSDTFSDD MAFKLDRREN DERRGSDRSD RLHKHRHHQH RRSRDLLKAK 180
  181 QTEKEKSQEV SSKSGSMKDR ISGSSKRSNE ETDDYGKAQV AKSSSKESRS SKLHKEKTRK 240
  241 ERELKSGHKD RSKSHRKRET PKSYKTVDSP KRRSRSPHRK WSDSSKQDDS PSGASYGQDY 300
  301 DLSPSRSHTS SNYDSYKKSP GSTSRRQSVS PPYKEPSAYQ SSTRSPSPYS RRQRSVSPYS 360
  361 RRRSSSYERS GSYSGRSPSP YGRRRSSSPF LSKRSLSRSP LPSRKSMKSR SRSPAYSRHS 420
  421 SSHSKKKRSS SRSRHSSISP VRLPLNSSLG AELSRKKKER AAAAAAAKMD GKESKGSPVF 480
  481 LPRKENSSVE AKDSGLESKK LPRSVKLEKS APDTELVNVT HLNTEVKNSS DTGKVKLDEN 540
  541 SEKHLVKDLK AQGTRDSKPI ALKEEIVTPK ETETSEKETP PPLPTIASPP PPLPTTTPPP 600
  601 QTPPLPPLPP IPALPQQPPL PPSQPAFSQV PASSTSTLPP STHSKTSAVS SQANSQPPVQ 660
  661 VSVKTQVSVT AAIPHLKTST LPPLPLPPLL PGDDDMDSPK ETLPSKPVKK EKEQRTRHLL 720
  721 TDLPLPPELP GGDLSPPDSP EPKAITPPQQ PYKKRPKICC PRYGERRQTE SDWGKRCVDK 780
  781 FDIIGIIGEG TYGQVYKAKD KDTGELVALK KVRLDNEKEG FPITAIREIK ILRQLIHRSV 840
  841 VNMKEIVTDK QDALDFKKDK GAFYLVFEYM DHDLMGLLES GLVHFSEDHI KSFMKQLMEG 900
  901 LEYCHKKNFL HRDIKCSNIL LNNSGQIKLA DFGLARLYNS EESRPYTNKV ITLWYRPPEL 960
  961 LLGEERYTPA IDVWSCGCIL GELFTKKPIF QANLELAQLE LISRLCGSPC PAVWPDVIKL1020
 1021 PYFNTMKPKK QYRRRLREEF SFIPSAALDL LDHMLTLDPS KRCTAEQTLQ SDFLKDVELS1080
 1081 KMAPPDLPHW QDCHELWSKK RRRQRQSGVV VEEPPPSKTS RKETTSGTST EPVKNSSPAP1140
 1141 PQPAPGKVES GAGDAIGLAD ITQQLNQSEL AVLLNLLQSQ TDLSIPQMAQ LLNIHSNPEM1200
 1201 QQQLEALNQS ISALTEATSQ QQDSETMAPE ESLKEAPSAP VILPSAEQMT LEASSTPADM1260
 1261 QNILAVLLSQ LMKTQEPAGS LEENNSDKNS GPQGPRRTPT MPQEEAAEKR PPEPPGPPPP1320
 1321 PPPPPLVEGD LSSAPQELNP AVTAALLQLL SQPEAEPPGH LPHEHQALRP MEYSTRPRPN1380
 1381 RTYGNTDGPE TGFSAIDTDE RNSGPALTES LVQTLVKNRT FSGSLSHLGE SSSYQGTGSV1440
 1441 QFPGDQDLRF ARVPLALHPV VGQPFLKAEG SSNSVVHAET KLQNYGELGP GTTGASSSGA1500
 1501 GLHWGGPTQS SAYGKLYRGP TRVPPRGGRG RGVPY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle