YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3402275
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRWRFSPRS SFARTLLLIV TLLFVSLVTT YLVVLNFAIL PSLQQFNKVL AYEVRMLMTD  60
   61 RLQLEDGTLL EVPPAFRREI YRELGISLYT NAAAEESGLR WAQHYKFLSD QMAQQLGGPT 120
  121 DVRVEVNKNS PVVWLKTWLS PDIWVRVPLT EIHQGDFSPL FRYTLAIMLL AVGGAWLFIR 180
  181 IQNRPLVELE HAALQVGKGI IPPPLREYGA SEVRSVTRAF NQMAAGVKLL ADDRTLLMAG 240
  241 VSHDLRTPLT RIRLATEMMS EADGYLSDSI NKDIEECNAI IEQFIDYLRT GQEMPTEPSD 300
  301 LNAVLGEVIA AESGYERVIE TDLCEGEVMV DIHPLSIKRA LANMVVNAAR YQKAKIKVSS 360
  361 GTELQRAWFQ VEDDGPRIKP ENLNHLFHPF VRGDSARTTI GTGLGLAIVH RIIDAHAGSL 420
  421 DIGTSERGGL RIRAYIPLPL DVNPNPPAVA

Type	Start	End	Confidence
Cytoplasmic	1	15	0.60
Transmembrane Helix	16	35	0.66
Non-Cytoplasmic	36	159	0.96
Transmembrane Helix	160	179	0.60
Cytoplasmic	180	450	0.59