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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|227947
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.85
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVKKTYGFR KSKISKTLCG AVLGTVAAVS VAGQKVFADE TTTTSDVDTK VVGTQTGNPA  60
   61 TNLPEAQGSA SKQAEQSQTK LERQMVHTIE VPKTDLDQAA KDAKSAGVNV VQDADVNKGT 120
  121 VKTAEEAVQK ETEIKEDYTK QAEDIKKTTD QYKSDVAAHE AEVAKIKAKN QATKEQYGKD 180
  181 MVAHKAEVER INAANAASKT AYEAKLAQYQ ADLAAVQKTN AANQASYQKA LAAYQAELKR 240
  241 VQEANAAAKA AYDTAVAANN AKNTEIAAAN EEIRKRNATA KAEYETKLAQ YQAELKRVQE 300
  301 ANAANEADYQ AKLTAYQTEL ARVQKANADA KAAYEAAVAA NNAKKAALTA ENTAIKQRNE 360
  361 NAKATYEAAL KQYEADLAAV KKANAANEAD YQAKLTAYQT ELARVQKANA DAKAAYEAAV 420
  421 AANNAANAAL TAENTAIKKR NADAKADYEA KLAKYQADLA KYQKDLADYP VKLKAYEDEQ 480
  481 ASIKAALAEL EKHKNEDGNL TEPSAQNLVY DLEPNANLSL TTDGKFLKAS AVDDAFSKST 540
  541 SKAKYDQKIL QLDDLDITNL FQSNDVASSM ELYGNFGDKA GWSTTVSNNS QVKWGSVLLE 600
  601 RGQSATATYT NLQNSYYNGK KISKIVYKYT VDPKSKFQGQ KVWLGIFTDP TLGVFASAYT 660
  661 GQVEKNTSIF IKNEFTFYDE DGKPINFDNA LLSVASLNRE NNSIEMAKDY TGKFVKISGS 720
  721 SIGEKNGMIY ATDTLNFRQG QGGARWTMYT RASEPGSGWD SSDAPNSWYG AGAIRMSGPN 780
  781 NSVTLGAISS TLVVPADPTM AIETGKKPNI WYSLNGKIRA VNLPKVTKEK PTPPVKPTAP 840
  841 TKPTYETEKP LKPAPVAPNY EKEPTPPTRT PDQAEPKKPT PPTYETEKPL EPAPVEPSYE 900
  901 AEPTPPTRTP DQAEPNKPTP PTYETEKPLE PAPVEPSYEA EPTPPTPTPD QPEPNKPVEP 960
  961 TYEVIPTPPT DPVYQDLPTP PSIPTVHFHY FKLAVQPQVN KEIRNNNDVN IDRTLVAKQS1020
 1021 VVKFQLKTAD LPAGRDETTS FVLVDPLPSG YQFNPEATKA ASPGFDVAYD NATNTVTFKA1080
 1081 TAATLATFNA DLTKSVATIY PTVVGQVLND GATYKNNFSL TVNDAYGIKS NVVRVTTPGK1140
 1141 PNDPDNPNNN YIKPTKVNKN ENGVVIDGKT VLAGSTNYYE LTWDLDQYKN DRSSADTIQQ1200
 1201 GFYYVDDYPE EALELRQDLV KITDANGNEV TGVSVDNYTS LEAAPQEIRD VLSKAGIRPK1260
 1261 GAFQIFRADN PREFYDTYVK TGIDLKIVSP MVVKKQMGQT GGSYEDQAYQ IDFGNGYASN1320
 1321 IVINNVPKIN PKKDVTLTLD PADTNNVDGQ TIPLNTVFNY RLIGGIIPAN HSEELFEYNF1380
 1381 YDDYDQTGDH YTGQYKVFAK VDITLKNGVI IKSGTELTQY TTAEVDTTKG AITIKFKEAF1440
 1441 LRSVSIDSAF QAESYIQMKR IAVGTFENTY INTVNGVTYS SNTVKTTTPE DPADPTDPQD1500
 1501 PSSPRTSTVI IYKPQSTAYQ PSSVQKTLPN TGVTNNAYMP LLGIIGLVTS FSLLGLKAKK1560
 1561 D

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