YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19911223
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGHVEEGSE LGEQKVLIDN PADILVIAAY FLLVIGVGLW SMFRTNRGTV GGYFLAGRSM  60
   61 VWWPVGVSLF ASNIGSGHFV GLAGTGATSG LAVAGFEWNA LFVVLLLGWL FVPVYLTAGV 120
  121 ITMPQYLRKR FGGRRIRLYL SVLSLFLYIF TKISVDMFSG AVFIQQALGW NIYASVIALL 180
  181 GITMIYTVTG GLAALMYTDT VQTFVILAGA FILTGYGMGF THCGQGVALS CRGAFNVGAG 240
  241 TLLVSVMWAF VLGPGPLTTL PAQLSMKWAG TQVSSTNTWE Q

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.88
Transmembrane Helix	24	43	0.93
Cytoplasmic	44	59	0.84
Transmembrane Helix	60	82	0.88
Non-Cytoplasmic	83	99	0.79
Transmembrane Helix	100	122	0.88
Cytoplasmic	123	135	0.87
Transmembrane Helix	136	155	0.87
Non-Cytoplasmic	156	171	0.70
Transmembrane Helix	172	193	0.89
Cytoplasmic	194	202	0.67
Transmembrane Helix	203	223	0.89
Non-Cytoplasmic	224	236	0.76
Transmembrane Helix	237	260	0.83
Cytoplasmic	261	281	0.94