YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24473739
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEKQEIRRI EIGIIQLVVV IFAAMVASKI PYTEITQGSI VLLGVVHVVS YYISSYYENL  60
   61 KYRGYLDELI ATVKYCFIFA LIATFLSFFA DGSFSISRRG LLYVTMISGV LLYVTNTVLK 120
  121 YFRSSIYTRR KSNKNILLIS DQARLDNVLS RMKDNMDGRI SAVCVLDNPY FTDPFIKSVK 180
  181 PENLIEYATH SVVDQVLINL PSEQYKIWDY ASPFELMGIP VSINLNALEF MSQGEKHIQQ 240
  241 LGPFKVVTFS THFYSYGDIL AKRFLDICGA LVGLVLCGIV GIFLYPLIRK DGGPAIFAQY 300
  301 RVGENGRIFK FYKFRSMRVD AEEIKKNLMA QNQMSGGMFK MDNDPRITKI GHFIRKTSLD 360
  361 ELPQFWNVLK GDMSLVGTRP PTVDEYEKYT PEQKRRLSFK PGITGLWQVS GRSEITDFDE 420
  421 VVKLDVAYID GWTIWRDIQI LLKTIKVVVM KDGAK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.87
Transmembrane Helix	12	30	0.93
Non-Cytoplasmic	31	34	0.77
Transmembrane Helix	35	56	0.86
Cytoplasmic	57	70	0.88
Transmembrane Helix	71	90	0.92
Non-Cytoplasmic	91	100	0.73
Transmembrane Helix	101	122	0.93
Cytoplasmic	123	263	0.96
Transmembrane Helix	264	287	0.87
Non-Cytoplasmic	288	455	0.84