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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1587676
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPPRRGSPG LSLLLLLLLQ VSSTLCQEPE PCHPGFGAES YRFTVPRRHL ERGRVLGRVY  60
   61 FEGCTGRPRT AYFSDDSRFQ VGTDGVITVK RPLQLHRPET SFHVHAWDSS YRKLSTKVTL 120
  121 KAVGPHRNHH HRHESSPGAR TEVLTFPDSH HGLRRQKRDW VIPPISCPEN EKGPFPKNLV 180
  181 QIKSNRDKET QVFYSITGQG ADTPPVGVFI IERETGWLKV TEPLDREHIA KYTLFSHAVS 240
  241 SNAHAIEDPM EIVITVTDQN DNRPEFTQAV FKGSVMEGAL PGTSVMQVTA TDADDDVNTY 300
  301 NAAIAYEILS QEPELPHKNM FRINPATGVI SVVTTGLDRE TCPEYTLVVQ AADLQGEGLS 360
  361 TTAEAVITVT DINDNPPVFN PTTYRGQVPE NEANYLVATL KVTDKDEPNT PAWEAVYTVL 420
  421 NDPEGQFIVT TDPATNDGIL KTAKGLDFEA KQQYILHVTV QNAVPFEVAL PTSTATVTVD 480
  481 VVDRNEAPIF VPPEKRVEVP EDFGVGLEIT SYTARPPDTF MQQKITYRIW RDAANWLEIN 540
  541 PETGAISTRA ELDREDTDYV KNSTYTALII ATDNGSPLAT GTGTLLLILS DVNDNAPVPD 600
  601 PRRMDFCQRD PQPQLINIID PDLPPNTSPF TAELTHGASV NWTIEYSDPR QESIILKPKK 660
  661 TLQLGDYKIN LKLADNQNKD QVTTLDVLVC DCEGAVNNCM RATIVEAGLQ VPAILGILGG 720
  721 ILALLILVLL LLLFVRRRGV VKEPLLPPED HTRDNVYYYD EEGGGEEDQD FDLSQLHRGL 780
  781 DARPEVIRND VAPTLMSVPQ YRPRPANPDE IGNFIDENLK VADSDPTAPP YDSLLVFDYE 840
  841 GSGSEAASLS SLNSSESDQD QDYDYLNEWG NRFKKLAHMY GGAEDD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle