YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8925325
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTCLRSGML IIVLLGILGI PEPISAGNIL AVYPHFGFSH FKVVMPILNE LAHRGHDITV  60
   61 ISYVKNPQAG AYPNYEELLI SAPGEDQSST TINLVPLTEH TPTRSLGVLI REYVALHEEG 120
  121 QKTCEHLFAS GHIERAIERH QNRPYDLLLT EYFNSDCQLA LAKLLNLPII GLSTCALMPY 180
  181 YYDRIDLPDT PAFIQSEFVG FAGQLNWHER LLNFVQAKLV KFLYKYHSNR ADNELVRKYL 240
  241 GVEVDVEEVA RTQTAFVFGN QHYSLMGSRP QSLQFVEIGG VHITKKAEQE LPQNIANFLN 300
  301 QSAEGVIFIS WGSMVRASSI DEDKLSAILE VLKSQPLKII WKWEAEETPD TDASKFLFVK 360
  361 WAPQLALLCH PKVKLFWSHG GLLGTTESVH CGKPLLVTPI YGDQFLNAFS VQNRGMGLKL 420
  421 DYKDITVPNL KKALAELSKN SYAQRSLEVS KVFNERQQTP LESAIWSVEH VISNGLIAAR 480
  481 LLQSPGIELN GFVYHSLDSV ALILLPLILL ILVLCYLCKR NPSKLAHKKV GKKPKRS

Type	Start	End	Confidence
Signal Peptide	1	26	0.94
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	498	0.99
Transmembrane Helix	499	518	0.94
Cytoplasmic	519	537	0.96