YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|225253
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.95
Transmembrane Helix	8	29	0.93
Cytoplasmic	30	39	0.81
Transmembrane Helix	40	60	0.93
Non-Cytoplasmic	61	87	0.90
Transmembrane Helix	88	110	0.90
Cytoplasmic	111	119	0.89
Transmembrane Helix	120	140	0.92
Non-Cytoplasmic	141	146	0.79
Transmembrane Helix	147	167	0.93
Cytoplasmic	168	178	0.89
Transmembrane Helix	179	201	0.87
Non-Cytoplasmic	202	220	0.94
Transmembrane Helix	221	242	0.90
Cytoplasmic	243	260	0.86
Transmembrane Helix	261	281	0.93
Non-Cytoplasmic	282	288	0.80
Transmembrane Helix	289	311	0.93
Cytoplasmic	312	322	0.81
Transmembrane Helix	323	343	0.83
Non-Cytoplasmic	344	353	0.67
Transmembrane Helix	354	374	0.91
Cytoplasmic	375	392	0.91
Transmembrane Helix	393	414	0.91
Non-Cytoplasmic	415	428	0.80
Transmembrane Helix	429	449	0.90
Cytoplasmic	450	541	0.97
Transmembrane Helix	542	563	0.92
Non-Cytoplasmic	564	571	0.90
Transmembrane Helix	572	593	0.86
Cytoplasmic	594	687	0.89
Transmembrane Helix	688	707	0.96
Non-Cytoplasmic	708	710	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTYEYAWI IPFIPLPVPM LIGAGLFLFP TATKSFRRMW AFQSVLLLSI VMVFSIYLSI  60
   61 QQINSSSFYQ YVWSWIINND FSLDFGYLID PLTSIMSILI TTVGIMVLIY SDNYMAHDQG 120
  121 YLRFFAYMSF FSTSMLGLVT SSNLIQIYIF WELVGLCSYL LIGFWFTRPV AANACQKAFV 180
  181 TNRVGDFGLL LGILGFYWIT GSFEFRDLFE IFNNLIYNNE VDFLFVTLCA VLLFAGAVAK 240
  241 SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFRVIPYI MYLISVIGII 300
  301 TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS 360
  361 GSIIHSMETI VGYSPAKSQN MGLMGGLRKH VPISKITFLL GTLSLCGIPP LACFWSKDEI 420
  421 LNDSWLYSPI FAIIAWATAG LTAFYMFRIY LLTFEGHLNA HFPNYGGKQK TPFYSISLWG 480
  481 KNGVKKNSCL LTMNNNESTY FFAKTKYPID KNGRKMTRPF MTIAHFEHKA VYSYPYESDN 540
  541 TMLFPIFVLG LFTLFVGSIG IPFNQEGGNL DILSKWLAYF GIFIASFLYK PIYSSLKNFE 600
  601 LINSFVKKGP KRILWDKIIN GIYDWSYNRA YIDAFYTRFL VGGIRGLAEF THFFDRRVID 660
  661 GTDNGVGVIS FIVGEGIKYI GGGRISSYLF LYLAYVSIFL LVYYLLFSTL