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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40021643
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAGSNEPDG VLSYQRPDEE AVVDQGGTST ILNIHYEKEE LEGHRTLYVG VRMPLGRQSH  60
   61 RHHRTHGQKH RRRGGRGKGA SQGEEGLEAS AHDTPSQRVQ FILGTEEDEE HVPHELFTEL 120
  121 DEICMKEGEE AEWKETARWL KFEEDVEDGG ERWSKPYVAT LSLHSLFELR SCLINGSVLL 180
  181 DMRASSIEEI SDLILDQQEL LRDLSDSVRV KVREALLKKH HHQNEKKRNN LIPIVRSFAE 240
  241 VGKKQSDPHS MDRDGQTVSP QSAPATNLEV KNGVNCEHSP VDLSKADLHF MKKIPAGAEA 300
  301 SNVLVGEVDT LDRPIVAFVR LSPAVLLSGL TEVPIPTRFL FILLGPVGKG QQYHEIGRSM 360
  361 ATIMTDEIFH DVAYKAKERD DLLAGIDEFL DQVTVLPPGE WDPSIRIEPP KNVPSQEKRK 420
  421 MPGVPNGNIC HVEPEPHGGH SGPELERTGR LFGGLVLDVK RKAPWYWSDY RDALSLQCLA 480
  481 SFLFLYCACM SPVITFGGLL GEATEGRISA IESLFGASMT GIAYSLFAGQ PLTILGSTGP 540
  541 VLVFEKILFK FCKDYALSYL SLRACIGLWT AFLCIVLVAT DASSLVCYIT RFTEEAFASL 600
  601 ICIIFIYEAI EKLIHLAETY PIHMHSQLDH LSLYYCRCAL PENPNNHTLQ YWKEHSIPTA 660
  661 DVNWANLTVS VRSTVSDFAV FLTIFTMVIL DFLIGVPSPK LQVPSVFKPT RDDRGWFISP 720
  721 IGPNPWWTVI AAIIPALLCT ILIFMDQQIT AVIINRKEHK LKKGCGYHLD LLVVAIMLGV 780
  781 CSLMGLPWFV AATVLSITHV NSLKLESECS APGEQPKFLG IREQRVTGLM IFVLMGCSVF 840
  841 MTAVLKFIPM PVLYGVFLYM GVSSLQGIQF FDRLKLFGMP AKHQPDFIYL RHVPLRKVHL 900
  901 FTLVQLTCLV LLWVIKASPA AIVFPMMVLA LVFVRKVMDL CFSKRELSWL DDLMPESKKK 960
  961 KLDDAKKKEE EEAEKMLDIG GDKFPLESRK LLSSPGKNNS FRCDPSEINI SDEMPKTTVW1020
 1021 KALSINSGNT KEKSPFN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle