YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8886699
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	141	0.54
Transmembrane Helix	142	163	0.55
Non-Cytoplasmic	164	249	0.74
Transmembrane Helix	250	269	0.75
Cytoplasmic	270	276	0.84
Transmembrane Helix	277	299	0.87
Non-Cytoplasmic	300	309	0.72
Transmembrane Helix	310	328	0.89
Cytoplasmic	329	337	0.72
Transmembrane Helix	338	361	0.88
Non-Cytoplasmic	362	372	0.69
Transmembrane Helix	373	395	0.89
Cytoplasmic	396	402	0.85
Transmembrane Helix	403	426	0.82
Non-Cytoplasmic	427	444	0.83
Transmembrane Helix	445	466	0.94
Cytoplasmic	467	475	0.71
Transmembrane Helix	476	494	0.83
Non-Cytoplasmic	495	497	0.81
Transmembrane Helix	498	518	0.87
Cytoplasmic	519	531	0.92
Transmembrane Helix	532	554	0.86
Non-Cytoplasmic	555	562	0.78
Transmembrane Helix	563	585	0.91
Cytoplasmic	586	600	0.92
Transmembrane Helix	601	622	0.86
Non-Cytoplasmic	623	630	0.69
Transmembrane Helix	631	654	0.71
Cytoplasmic	655	1179	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAHSLQQEV NLSRRACRIP KWPLSGAQQE EENDEEVLEE QLLNGANQSP ASEVAAFRLG  60
   61 PVHSENSPGG IDEDPLSFRN RRMHDGRMGS VVDFSCDLVA HVFLLVKALV MGVLRFDLTS 120
  121 PKRASSSSSS SSSYGSQFSK NLVKWCTWAI VLSVLLANHG GFVLARPKNG VVTADGVDAA 180
  181 SVASGQWELL TPQPVSSDGA GGGQISGSLS SVKQQDDQSH GGELGDASHG EGHEVERYPV 240
  241 AQVEFSRVET PFVIGVWILS ASIAKIGFHM TPKLSKIFPE SCLLIVVGVI IGVLLRYATN 300
  301 LHVSPLTPNT FFFYMLPPII LDAGYFMPNR MFFDNIGTIL LMAVIGTIFN IATIGVSLWA 360
  361 CGLTGIFGVD LPFLHVFLFS SLISAVDPVA VLAVFEEIHV NEVLYIVVFG ESLLNDAVTV 420
  421 VMYHMFESYN EIGASNIQVV DIVSGVASFF VVALGGTIIG VIWGFLTGLV TRFTDHVRVI 480
  481 EPIFIFVMAY LAYLNAEIFH MSGILAITFC GITMKNYVEQ NVSHKSHTTI KYALKMLSSS 540
  541 AETIIFMFLG VATVNNRHIW NTWFVILTIV FCSVFRIIGV LILSAMANRF RIHKLSKVDQ 600
  601 FVMSYGGLRG AVAFALVLLV STDHIPLQPM FVTTTIAVIY FTVFLQGITI KPLVRVLNVK 660
  661 RANKRKPTMN ERIHERFMDH TMAGIEDIVG KTGNYNIRDK FKRFDNRFIR PYLIKNLQGP 720
  721 EPKILETYSK LTMRDAMDYM RRNPSTIGQM SGTESMSALF RNYTGVFGGS PSFSNLENST 780
  781 RNLDMQELDY NPSKKDLTDA RIHHLLSVEL KPYRRTRRLS YSRHAVDDRD LSTQVNYKMQ 840
  841 MNIRRMISEK KHKRSKRGKD GKTQNHVSFP ELPQNGSAKQ FANDYINEVL HEDNEDEDKL 900
  901 PTAAGDDWDG GGLTFTAKSS LDEKSEQPKN DKRMSKDLRD LEAAENRVTT PTAIEAVLPW 960
  961 KRVDEDDENG AIKQNEFPSW ASNKEYLAYN SPSATFLGGL TQPKQAKSVI GLFRRESSGS1020
 1021 GGIVIGGVTD SETSTPVTAT TPIGRAKKDK RSASIAGYIT FPGSSDAGDD PLGVSRAVVS1080
 1081 HANAFPVTAS HRRNNRRGSL LELSGEAIPE ENYSKSLPDR DKHGPRRGPT LIKASGTPKP1140
 1141 ARNSKSNNPQ TTALLSSSST DSEEEEEEDE DCADEQHPI