YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|223627
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPSRPVGGPC YLGKLTMLAP KHTDILKVLV NSSRTGIRRK RSTSHLDDTC SDEVQLWGPT  60
   61 ARIFASILAP GVAAAQALRE IERLACWSVK QANLTTSLLG DLLDDVTSIR HAVLQNRAAI 120
  121 DFLLLAHGHG CEDVAGMCCF NLSDQSESIQ KKFQLMKEHV NKIGVDSDLI GSWLRGLFGG 180
  181 IGEWAVHLLK GLLLGLVVIL LLVVCLPCLL QMLCGNRRKM INNSISYHTE YKKLQKACGQ 240
  241 PESRIVMGSS KSKPKDPSQR RRSLEPPDST HHGGFPASQT PNKTAAPDTH RTPSRSFGTV 300
  301 ATEPKLFGGF NTSDTVTSPQ RAGALAGGVT TFVALYDYES WIETDLSFKK GERLQIVNNT 360
  361 EGNWWLAHSL TTGQTGYIPS NYVAPSDSIQ AEEWYFGKIT RRESERLLLN PENPRGTFLV 420
  421 RESETTKGAY CLSVSDFDNA KGLNVKHYKI RKLDSGGFYI TSRTQFSSLQ QLVAYYSKHA 480
  481 DGLCHRLTNV CPTSKPQTQG LAKDAWEIPR ESLRLEVKLG QGCFGEVWMG TWNGTTRVAI 540
  541 KTLKPGTMSP EAFLQEAQVM KKLRHEKLVQ LYAVVSEEPI YIVIEYMSKG SLLDFLKGEM 600
  601 GKYLRLPQLV DMAAQIASGM AYVERMNYVH RDLRAANILV GENLVCKVAD FGLARLIEDN 660
  661 EYTARQGAKF PIKWTAPEAA LYGRFTIKSD VWSFGILLTE LTTKGRVPYP GMGNGEVLDR 720
  721 VERGYRMPCP PECPESLHDL MCQCWRRDPE ERPTFEYLQA QLLPACVLEV AE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle