YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50539852, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGKLLLYA GLSLSLCALG MLAVAICSDH WYETDARRYR ERCRSFSSRR KDPGFIYIPN  60
   61 NSLPLRASRS RLDRWEEKLL LARNRRQLFA MSAADECSKR YNSTNMGLWS KCHRLGFDQE 120
  121 IEDLIRNGSI ARCSYIKYHY SSATIPKDLS YNITKTIRQD EWHSLHLRRM TAGFMGMAVA 180
  181 IILFGWIIGM LGCCWDRGLM QYVAGLLFLM GGTFCIISLC TCVAGINFEL SRYPRYIYGL 240
  241 PDGISHGYGW SMFCAWGGLG LSLIAGFFCT LAPSVQPIPR STCPKSRQEN GTVC

Type	Start	End	Confidence
Signal Peptide	1	25	0.93
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	171	0.94
Transmembrane Helix	172	195	0.91
Cytoplasmic	196	203	0.82
Transmembrane Helix	204	228	0.91
Non-Cytoplasmic	229	248	0.89
Transmembrane Helix	249	271	0.91
Cytoplasmic	272	294	0.89