YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLD7A_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSGVQLLG FGLSLIGIIG LIVGTILPQW KMSAYVGDSI ITAVATYQGL WMSCAFQSTG  60
   61 QLQCKIYDSI LQLDSDLQAT RALMIVGIIV SIAGLGVASI GMKCTTCGAD DKVRKTRTAM 120
  121 TGGIILLVGA LCAVVACSWF AHNVIRAFYN PFTPVNTKFE FGAAIFIAWG GSFLDVLGGA 180
  181 MLAASCPRSK QVSKYPKSNS TRSANGSNKE YV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.51
Transmembrane Helix	8	28	0.94
Non-Cytoplasmic	29	81	0.73
Transmembrane Helix	82	102	0.93
Cytoplasmic	103	120	0.87
Transmembrane Helix	121	142	0.95
Non-Cytoplasmic	143	162	0.90
Transmembrane Helix	163	184	0.93
Cytoplasmic	185	212	0.96