YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94733982, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.96
Transmembrane Helix	8	28	0.91
Non-Cytoplasmic	29	62	0.93
Transmembrane Helix	63	86	0.89
Cytoplasmic	87	95	0.89
Transmembrane Helix	96	116	0.94
Non-Cytoplasmic	117	122	0.71
Transmembrane Helix	123	145	0.90
Cytoplasmic	146	155	0.85
Transmembrane Helix	156	176	0.93
Non-Cytoplasmic	177	184	0.87
Transmembrane Helix	185	207	0.90
Cytoplasmic	208	271	0.97
Transmembrane Helix	272	293	0.86
Non-Cytoplasmic	294	306	0.83
Transmembrane Helix	307	328	0.94
Cytoplasmic	329	335	0.91
Transmembrane Helix	336	357	0.94
Non-Cytoplasmic	358	365	0.83
Transmembrane Helix	366	390	0.87
Cytoplasmic	391	400	0.87
Transmembrane Helix	401	421	0.92
Non-Cytoplasmic	422	428	0.79
Transmembrane Helix	429	449	0.94
Cytoplasmic	450	541	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGEKKQVTC YLLFSLSTAV IGSLQFGYNT GVINAPEQKL RAFFNATWME RYGEPISPGV  60
   61 CTIVWSFAVA IFSVGGMAGS FSVGVVANKF GRRKSMILVN VLALIGGGLM GLCTLCSSFE 120
  121 MIIAGRLMIG LFCGLFTGLT PMYVGEVSPT PLRGAFGTLH QLGVVVGILI AQIFGLESLL 180
  181 GSDKLWPILL ALTILPAILQ CFLLPFCPES PRYLLINLNE EEQARKALVR LRGYEDVGKD 240
  241 MQEMKEESAK MAMEKKVTIP ELFRSAAYRQ PLFIAIMLQL SQQLSGINAV FYYSTGIFKS 300
  301 AGVTQPIYAT IGAGVVNTVF TVVSLFLVER AGRRTLHLIG LGGMAISALA MTIALLLKDI 360
  361 EALQYLSIAA IFAFVAMFEM GPGPIPWFIV AELFSQGPRP AAMAVAGCSN WTANFIVGIT 420
  421 FPKLEELCGP YVFIIFMIFL IIFFIFTYFK VPETKGRTFD EIARGFSGAP PPSATSVEEP 480
  481 GRVALPASPV KEKVPLVEAP KSSSEQGPSS SEQPAKVEEK SSSVTQPLVD SSKEEKSNST 540
  541 M