YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94732134, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPDVFVGL IVVVTILSKS HADRNVYPSA GVLFVHVLER EYFKGEFPPY PKAGDTSNDP  60
   61 ITFNTNLRGF PDRPGWLRYI QRTSHSDGVL YGSPTADHVG KPTIIEITAY NKRTFETARH 120
  121 NLVINIMSTE EFPLPYQAEF YIKNMNVEEM LASEVLGDFL GAVKNVWQPE RLNAINITSA 180
  181 LDRGGRVPLP INDLKEGVYV MVGADVQFSS CLREVETPQN QLRCSQEMEP VISCDKKFRA 240
  241 QFNIDWCKIS LVDITKVVPV HSNRPDPGTG VLPDIGEYNP PSESLKSRDY FADFLITLAV 300
  301 PSAVATVLFI ILGYSMCCRR EGVEKRNMQT PDIQLVHHSS IQKSTKELRG MSKNREISWP 360
  361 LSTLPVFHPV SGEVVPPIHP DNYETTSMPL MQTQTNLQNQ IQIPQQQTSG KWYS

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	293	0.99
Transmembrane Helix	294	316	0.85
Cytoplasmic	317	414	0.91