YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50540252, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSMTSSHTM QYIGLLLLAA ILLQTIAVAV TFIYFSNVLS TMKETFSKSS VSCLMRANLR  60
   61 TIKGQELNGA EGKDDPCWQV TQQLHFLIEK SMSSRYQKEI TSAVKDEVSR VLPSLVIQDQ 120
  121 EDSSRPKIAA HVTGSYTPES EKDGAGLPNR KVYGQKIQSW ESEKGLAFLQ NVELSDGELV 180
  181 VPQAGLYYIY SQTYFRHTLI EEDESAREDE YGSMGESVRG KPMLQYVYKK VSSYQVPILL 240
  241 MKNARTTCWS RDSEYGLYSI YQAGLFQLGS GDRVFVTVSN VSTIDMDEKS SFFGAFLVS

Type	Start	End	Confidence
Signal Peptide	1	29	0.53
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	299	0.92