YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49904371, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRMKVKNEL ARQIMGEILG TFVLLLFGCA AAAQVKTSRE TKGQFLSGNI AFSVGVMSAM  60
   61 YLCRAVSGAH LNPAVSLSFC VLGDLAWIKL LPYSLAQILG AYLASGLVYL IYHDAIMEFS 120
  121 GGVLTVFGPN ETASIFATYP TDVVSVQTNF LDQVVGTAML MLCILPLNDK RNAPAPEALL 180
  181 PPIVATVVLG ISISMSANCG AAINPARDLG PRLFTFTAGW GTEVFTCYDY FFWIPLVAPM 240
  241 VGGVLGSIIY LVFIQWHLPE LEDESESGEM NDQTKVMEHN NKKDEIYLKM SSI

Type	Start	End	Confidence
Cytoplasmic	1	13	0.86
Transmembrane Helix	14	35	0.88
Non-Cytoplasmic	36	44	0.78
Transmembrane Helix	45	63	0.77
Cytoplasmic	64	92	0.43
Transmembrane Helix	93	113	0.82
Non-Cytoplasmic	114	148	0.66
Transmembrane Helix	149	168	0.74
Cytoplasmic	169	178	0.81
Transmembrane Helix	179	203	0.83
Non-Cytoplasmic	204	229	0.82
Transmembrane Helix	230	254	0.88
Cytoplasmic	255	293	0.90